JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:29 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1kmva_.name2015-04-17 17:51 0 Job name flag file
[ ]jp_k4dTTGx.align2015-04-17 19:28 184KPSIBLAST alignment in FASTA format
[TXT]jp_k4dTTGx.als2015-04-17 19:28 3.2KAlscript command file for PS/PDF output
[ ]jp_k4dTTGx.blast.gz2015-04-17 19:27 5.0MCompressed PSIBLAST output file
[TXT]jp_k4dTTGx.coils.csv2015-04-17 19:28 1.1KCOILS output in CSV format
[ ]jp_k4dTTGx.coilseq.lupas_142015-04-17 19:28 7.8KCOILS output, window length 14
[ ]jp_k4dTTGx.coilseq.lupas_212015-04-17 19:28 7.8KCOILS output, window length 21
[ ]jp_k4dTTGx.coilseq.lupas_282015-04-17 19:28 7.8KCOILS output, window length 28
[ ]jp_k4dTTGx.concise2015-04-17 19:28 362KPrediction: coiled-coil, solvent, alignment
[ ]jp_k4dTTGx.concise.blc2015-04-17 19:28 184KBLC format prediction and alignment data
[ ]jp_k4dTTGx.concise.fasta2015-04-17 19:28 186KPrediction: coiled-coil, solvent, alignment
[ ]jp_k4dTTGx.concise.pdf2015-04-17 19:28 1.2MPDF prediction and alignment data
[ ]jp_k4dTTGx.concise.ps2015-04-17 19:28 22MPrediction: coiled-coil, solvent, alignment
[ ]jp_k4dTTGx.fasta2015-04-17 19:21 200 Input query sequence in FASTA format
[ ]jp_k4dTTGx.full_MSA.fasta2015-04-17 19:28 10MFull MSA before JPred filters in FASTA
[TXT]jp_k4dTTGx.full_MSA.fasta.noGaps.html2015-04-17 19:29 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_k4dTTGx.full_MSA.fasta.withGaps.html2015-04-17 19:29 28MFull MSA before JPred filters in FASTA
[ ]jp_k4dTTGx.hmm2015-04-17 19:28 35KHHMer2 profile of the alignment
[TXT]jp_k4dTTGx.html2015-04-17 19:28 375KHTML prediction and alignment data
[ ]jp_k4dTTGx.input2015-04-17 17:51 192 Raw input data for analysis
[ ]jp_k4dTTGx.jalview2015-04-17 19:28 4.5KJalview annotation file for alignment
[ ]jp_k4dTTGx.jnet2015-04-17 19:28 6.8KJnet secondary structure output
[TXT]jp_k4dTTGx.profile2015-04-17 19:24 30KPSIBLAST profile from alignment
[ ]jp_k4dTTGx.pssm2015-04-17 19:28 40KPSIBLAST PSSM for Jnet
[TXT]jp_k4dTTGx.results.html2016-02-15 12:17 83KJPred results page
[TXT]jp_k4dTTGx.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_k4dTTGx.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_k4dTTGx.seq2015-04-17 17:51 200 Sequence data file
[TXT]jp_k4dTTGx.simple.html2015-04-17 19:28 1.6KBrief HTML: sequence and prediction only
[TXT]jp_k4dTTGx.svg.html2015-04-17 19:29 75KJalview SVG summary of results
[ ]jp_k4dTTGx.tar.gz2015-04-17 19:29 9.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.