JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:22 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1kq6a_.name2015-04-17 16:00 0 Job name flag file
[ ]jp_Cdhco3A.align2015-04-17 16:22 110KPSIBLAST alignment in FASTA format
[TXT]jp_Cdhco3A.als2015-04-17 16:22 2.2KAlscript command file for PS/PDF output
[ ]jp_Cdhco3A.blast.gz2015-04-17 16:21 2.7MCompressed PSIBLAST output file
[TXT]jp_Cdhco3A.coils.csv2015-04-17 16:22 870 COILS output in CSV format
[ ]jp_Cdhco3A.coilseq.lupas_142015-04-17 16:22 5.9KCOILS output, window length 14
[ ]jp_Cdhco3A.coilseq.lupas_212015-04-17 16:22 5.9KCOILS output, window length 21
[ ]jp_Cdhco3A.coilseq.lupas_282015-04-17 16:22 5.9KCOILS output, window length 28
[ ]jp_Cdhco3A.concise2015-04-17 16:22 217KPrediction: coiled-coil, solvent, alignment
[ ]jp_Cdhco3A.concise.blc2015-04-17 16:22 111KBLC format prediction and alignment data
[ ]jp_Cdhco3A.concise.fasta2015-04-17 16:22 111KPrediction: coiled-coil, solvent, alignment
[ ]jp_Cdhco3A.concise.pdf2015-04-17 16:22 705KPDF prediction and alignment data
[ ]jp_Cdhco3A.concise.ps2015-04-17 16:22 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_Cdhco3A.fasta2015-04-17 16:18 154 Input query sequence in FASTA format
[ ]jp_Cdhco3A.full_MSA.fasta2015-04-17 16:21 9.3MFull MSA before JPred filters in FASTA
[TXT]jp_Cdhco3A.full_MSA.fasta.noGaps.html2015-04-17 16:22 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_Cdhco3A.full_MSA.fasta.withGaps.html2015-04-17 16:22 26MFull MSA before JPred filters in FASTA
[ ]jp_Cdhco3A.hmm2015-04-17 16:22 26KHHMer2 profile of the alignment
[TXT]jp_Cdhco3A.html2015-04-17 16:22 258KHTML prediction and alignment data
[ ]jp_Cdhco3A.input2015-04-17 16:00 147 Raw input data for analysis
[ ]jp_Cdhco3A.jalview2015-04-17 16:22 3.6KJalview annotation file for alignment
[ ]jp_Cdhco3A.jnet2015-04-17 16:22 5.2KJnet secondary structure output
[TXT]jp_Cdhco3A.profile2015-04-17 16:20 23KPSIBLAST profile from alignment
[ ]jp_Cdhco3A.pssm2015-04-17 16:22 30KPSIBLAST PSSM for Jnet
[TXT]jp_Cdhco3A.results.html2016-02-15 12:17 64KJPred results page
[TXT]jp_Cdhco3A.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Cdhco3A.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Cdhco3A.seq2015-04-17 16:00 154 Sequence data file
[TXT]jp_Cdhco3A.simple.html2015-04-17 16:22 1.3KBrief HTML: sequence and prediction only
[TXT]jp_Cdhco3A.svg.html2015-04-17 16:22 56KJalview SVG summary of results
[ ]jp_Cdhco3A.tar.gz2015-04-17 16:22 5.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.