JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:27 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1kqfb2.name2015-04-17 15:24 0 Job name flag file
[ ]jp_rpqkXyd.align2015-04-17 15:26 5.7KPSIBLAST alignment in FASTA format
[TXT]jp_rpqkXyd.als2015-04-17 15:26 1.3KAlscript command file for PS/PDF output
[ ]jp_rpqkXyd.blast.gz2015-04-17 15:26 13KCompressed PSIBLAST output file
[TXT]jp_rpqkXyd.coils.csv2015-04-17 15:26 300 COILS output in CSV format
[ ]jp_rpqkXyd.coilseq.lupas_142015-04-17 15:26 1.9KCOILS output, window length 14
[ ]jp_rpqkXyd.coilseq.lupas_212015-04-17 15:26 1.9KCOILS output, window length 21
[ ]jp_rpqkXyd.coilseq.lupas_282015-04-17 15:26 1.9KCOILS output, window length 28
[ ]jp_rpqkXyd.concise2015-04-17 15:26 12KPrediction: coiled-coil, solvent, alignment
[ ]jp_rpqkXyd.concise.blc2015-04-17 15:26 6.4KBLC format prediction and alignment data
[ ]jp_rpqkXyd.concise.fasta2015-04-17 15:26 6.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_rpqkXyd.concise.pdf2015-04-17 15:26 40KPDF prediction and alignment data
[ ]jp_rpqkXyd.concise.ps2015-04-17 15:26 652KPrediction: coiled-coil, solvent, alignment
[ ]jp_rpqkXyd.fasta2015-04-17 15:24 58 Input query sequence in FASTA format
[ ]jp_rpqkXyd.full_MSA.fasta2015-04-17 15:26 12KFull MSA before JPred filters in FASTA
[TXT]jp_rpqkXyd.full_MSA.fasta.noGaps.html2015-04-17 15:26 30KFull MSA before JPred filters in FASTA
[TXT]jp_rpqkXyd.full_MSA.fasta.withGaps.html2015-04-17 15:26 48KFull MSA before JPred filters in FASTA
[ ]jp_rpqkXyd.hmm2015-04-17 15:26 8.4KHHMer2 profile of the alignment
[TXT]jp_rpqkXyd.html2015-04-17 15:26 29KHTML prediction and alignment data
[ ]jp_rpqkXyd.input2015-04-17 15:24 52 Raw input data for analysis
[ ]jp_rpqkXyd.jalview2015-04-17 15:26 1.7KJalview annotation file for alignment
[ ]jp_rpqkXyd.jnet2015-04-17 15:26 1.7KJnet secondary structure output
[TXT]jp_rpqkXyd.profile2015-04-17 15:25 7.6KPSIBLAST profile from alignment
[ ]jp_rpqkXyd.pssm2015-04-17 15:26 9.7KPSIBLAST PSSM for Jnet
[TXT]jp_rpqkXyd.results.html2016-02-15 12:17 28KJPred results page
[TXT]jp_rpqkXyd.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_rpqkXyd.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_rpqkXyd.seq2015-04-17 15:24 58 Sequence data file
[TXT]jp_rpqkXyd.simple.html2015-04-17 15:26 971 Brief HTML: sequence and prediction only
[TXT]jp_rpqkXyd.svg.html2015-04-17 15:26 20KJalview SVG summary of results
[ ]jp_rpqkXyd.tar.gz2015-04-17 15:27 86KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.