JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:10 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1kyfa2.name2015-04-17 15:52 0 Job name flag file
[ ]jp_kSHVFdt.align2015-04-17 16:10 28KPSIBLAST alignment in FASTA format
[TXT]jp_kSHVFdt.als2015-04-17 16:10 2.3KAlscript command file for PS/PDF output
[ ]jp_kSHVFdt.blast.gz2015-04-17 16:10 159KCompressed PSIBLAST output file
[TXT]jp_kSHVFdt.coils.csv2015-04-17 16:10 714 COILS output in CSV format
[ ]jp_kSHVFdt.coilseq.lupas_142015-04-17 16:10 4.8KCOILS output, window length 14
[ ]jp_kSHVFdt.coilseq.lupas_212015-04-17 16:10 4.8KCOILS output, window length 21
[ ]jp_kSHVFdt.coilseq.lupas_282015-04-17 16:10 4.8KCOILS output, window length 28
[ ]jp_kSHVFdt.concise2015-04-17 16:10 58KPrediction: coiled-coil, solvent, alignment
[ ]jp_kSHVFdt.concise.blc2015-04-17 16:10 29KBLC format prediction and alignment data
[ ]jp_kSHVFdt.concise.fasta2015-04-17 16:10 29KPrediction: coiled-coil, solvent, alignment
[ ]jp_kSHVFdt.concise.pdf2015-04-17 16:10 196KPDF prediction and alignment data
[ ]jp_kSHVFdt.concise.ps2015-04-17 16:10 3.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_kSHVFdt.fasta2015-04-17 16:07 128 Input query sequence in FASTA format
[ ]jp_kSHVFdt.full_MSA.fasta2015-04-17 16:10 220KFull MSA before JPred filters in FASTA
[TXT]jp_kSHVFdt.full_MSA.fasta.noGaps.html2015-04-17 16:10 99KFull MSA before JPred filters in FASTA
[TXT]jp_kSHVFdt.full_MSA.fasta.withGaps.html2015-04-17 16:10 1.0MFull MSA before JPred filters in FASTA
[ ]jp_kSHVFdt.hmm2015-04-17 16:10 21KHHMer2 profile of the alignment
[TXT]jp_kSHVFdt.html2015-04-17 16:10 82KHTML prediction and alignment data
[ ]jp_kSHVFdt.input2015-04-17 15:52 121 Raw input data for analysis
[ ]jp_kSHVFdt.jalview2015-04-17 16:10 3.1KJalview annotation file for alignment
[ ]jp_kSHVFdt.jnet2015-04-17 16:10 4.2KJnet secondary structure output
[TXT]jp_kSHVFdt.profile2015-04-17 16:09 19KPSIBLAST profile from alignment
[ ]jp_kSHVFdt.pssm2015-04-17 16:10 24KPSIBLAST PSSM for Jnet
[TXT]jp_kSHVFdt.results.html2016-02-15 12:17 55KJPred results page
[TXT]jp_kSHVFdt.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_kSHVFdt.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_kSHVFdt.seq2015-04-17 15:52 128 Sequence data file
[TXT]jp_kSHVFdt.simple.html2015-04-17 16:10 1.3KBrief HTML: sequence and prediction only
[TXT]jp_kSHVFdt.svg.html2015-04-17 16:10 47KJalview SVG summary of results
[ ]jp_kSHVFdt.tar.gz2015-04-17 16:10 511KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.