JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:25 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1kyqa2.name2015-04-17 16:37 0 Job name flag file
[ ]jp_dNgOMfb.align2015-04-17 17:25 89KPSIBLAST alignment in FASTA format
[TXT]jp_dNgOMfb.als2015-04-17 17:25 2.4KAlscript command file for PS/PDF output
[ ]jp_dNgOMfb.blast.gz2015-04-17 17:24 371KCompressed PSIBLAST output file
[TXT]jp_dNgOMfb.coils.csv2015-04-17 17:25 768 COILS output in CSV format
[ ]jp_dNgOMfb.coilseq.lupas_142015-04-17 17:25 5.2KCOILS output, window length 14
[ ]jp_dNgOMfb.coilseq.lupas_212015-04-17 17:25 5.2KCOILS output, window length 21
[ ]jp_dNgOMfb.coilseq.lupas_282015-04-17 17:25 5.2KCOILS output, window length 28
[ ]jp_dNgOMfb.concise2015-04-17 17:25 175KPrediction: coiled-coil, solvent, alignment
[ ]jp_dNgOMfb.concise.blc2015-04-17 17:25 90KBLC format prediction and alignment data
[ ]jp_dNgOMfb.concise.fasta2015-04-17 17:25 90KPrediction: coiled-coil, solvent, alignment
[ ]jp_dNgOMfb.concise.pdf2015-04-17 17:25 512KPDF prediction and alignment data
[ ]jp_dNgOMfb.concise.ps2015-04-17 17:25 9.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_dNgOMfb.fasta2015-04-17 17:20 137 Input query sequence in FASTA format
[ ]jp_dNgOMfb.full_MSA.fasta2015-04-17 17:24 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_dNgOMfb.full_MSA.fasta.noGaps.html2015-04-17 17:25 322KFull MSA before JPred filters in FASTA
[TXT]jp_dNgOMfb.full_MSA.fasta.withGaps.html2015-04-17 17:25 4.2MFull MSA before JPred filters in FASTA
[ ]jp_dNgOMfb.hmm2015-04-17 17:25 23KHHMer2 profile of the alignment
[TXT]jp_dNgOMfb.html2015-04-17 17:25 225KHTML prediction and alignment data
[ ]jp_dNgOMfb.input2015-04-17 16:37 130 Raw input data for analysis
[ ]jp_dNgOMfb.jalview2015-04-17 17:25 3.3KJalview annotation file for alignment
[ ]jp_dNgOMfb.jnet2015-04-17 17:25 4.6KJnet secondary structure output
[TXT]jp_dNgOMfb.profile2015-04-17 17:23 20KPSIBLAST profile from alignment
[ ]jp_dNgOMfb.pssm2015-04-17 17:25 26KPSIBLAST PSSM for Jnet
[TXT]jp_dNgOMfb.results.html2016-02-15 12:17 60KJPred results page
[TXT]jp_dNgOMfb.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_dNgOMfb.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_dNgOMfb.seq2015-04-17 16:37 137 Sequence data file
[TXT]jp_dNgOMfb.simple.html2015-04-17 17:25 1.3KBrief HTML: sequence and prediction only
[TXT]jp_dNgOMfb.svg.html2015-04-17 17:25 52KJalview SVG summary of results
[ ]jp_dNgOMfb.tar.gz2015-04-17 17:25 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.