JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:25 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1l3la2.name2015-04-17 19:04 0 Job name flag file
[ ]jp_K9Raycb.align2015-04-17 21:24 233KPSIBLAST alignment in FASTA format
[TXT]jp_K9Raycb.als2015-04-17 21:24 3.1KAlscript command file for PS/PDF output
[ ]jp_K9Raycb.blast.gz2015-04-17 21:23 829KCompressed PSIBLAST output file
[TXT]jp_K9Raycb.coils.csv2015-04-17 21:24 1.0KCOILS output in CSV format
[ ]jp_K9Raycb.coilseq.lupas_142015-04-17 21:24 7.1KCOILS output, window length 14
[ ]jp_K9Raycb.coilseq.lupas_212015-04-17 21:24 7.1KCOILS output, window length 21
[ ]jp_K9Raycb.coilseq.lupas_282015-04-17 21:24 7.1KCOILS output, window length 28
[ ]jp_K9Raycb.concise2015-04-17 21:24 454KPrediction: coiled-coil, solvent, alignment
[ ]jp_K9Raycb.concise.blc2015-04-17 21:24 232KBLC format prediction and alignment data
[ ]jp_K9Raycb.concise.fasta2015-04-17 21:24 235KPrediction: coiled-coil, solvent, alignment
[ ]jp_K9Raycb.concise.pdf2015-04-17 21:25 1.6MPDF prediction and alignment data
[ ]jp_K9Raycb.concise.ps2015-04-17 21:24 28MPrediction: coiled-coil, solvent, alignment
[ ]jp_K9Raycb.fasta2015-04-17 21:21 183 Input query sequence in FASTA format
[ ]jp_K9Raycb.full_MSA.fasta2015-04-17 21:23 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_K9Raycb.full_MSA.fasta.noGaps.html2015-04-17 21:25 450KFull MSA before JPred filters in FASTA
[TXT]jp_K9Raycb.full_MSA.fasta.withGaps.html2015-04-17 21:25 7.0MFull MSA before JPred filters in FASTA
[ ]jp_K9Raycb.hmm2015-04-17 21:24 32KHHMer2 profile of the alignment
[TXT]jp_K9Raycb.html2015-04-17 21:24 492KHTML prediction and alignment data
[ ]jp_K9Raycb.input2015-04-17 19:04 175 Raw input data for analysis
[ ]jp_K9Raycb.jalview2015-04-17 21:24 4.2KJalview annotation file for alignment
[ ]jp_K9Raycb.jnet2015-04-17 21:24 6.2KJnet secondary structure output
[TXT]jp_K9Raycb.profile2015-04-17 21:22 27KPSIBLAST profile from alignment
[ ]jp_K9Raycb.pssm2015-04-17 21:24 36KPSIBLAST PSSM for Jnet
[TXT]jp_K9Raycb.results.html2016-02-15 12:17 77KJPred results page
[TXT]jp_K9Raycb.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_K9Raycb.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_K9Raycb.seq2015-04-17 19:04 183 Sequence data file
[TXT]jp_K9Raycb.simple.html2015-04-17 21:24 1.5KBrief HTML: sequence and prediction only
[TXT]jp_K9Raycb.svg.html2015-04-17 21:25 69KJalview SVG summary of results
[ ]jp_K9Raycb.tar.gz2015-04-17 21:25 3.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.