JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:30 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1l3pa_.name2015-04-17 16:37 0 Job name flag file
[ ]jp_4NgABBO.align2015-04-17 17:30 2.6KPSIBLAST alignment in FASTA format
[TXT]jp_4NgABBO.als2015-04-17 17:30 1.8KAlscript command file for PS/PDF output
[ ]jp_4NgABBO.blast.gz2015-04-17 17:30 6.2KCompressed PSIBLAST output file
[TXT]jp_4NgABBO.coils.csv2015-04-17 17:30 642 COILS output in CSV format
[ ]jp_4NgABBO.coilseq.lupas_142015-04-17 17:30 4.3KCOILS output, window length 14
[ ]jp_4NgABBO.coilseq.lupas_212015-04-17 17:30 4.3KCOILS output, window length 21
[ ]jp_4NgABBO.coilseq.lupas_282015-04-17 17:30 4.3KCOILS output, window length 28
[ ]jp_4NgABBO.concise2015-04-17 17:30 9.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_4NgABBO.concise.blc2015-04-17 17:30 4.1KBLC format prediction and alignment data
[ ]jp_4NgABBO.concise.fasta2015-04-17 17:30 3.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_4NgABBO.concise.pdf2015-04-17 17:30 26KPDF prediction and alignment data
[ ]jp_4NgABBO.concise.ps2015-04-17 17:30 475KPrediction: coiled-coil, solvent, alignment
[ ]jp_4NgABBO.fasta2015-04-17 17:20 116 Input query sequence in FASTA format
[ ]jp_4NgABBO.full_MSA.fasta2015-04-17 17:30 5.3KFull MSA before JPred filters in FASTA
[TXT]jp_4NgABBO.full_MSA.fasta.noGaps.html2015-04-17 17:30 9.7KFull MSA before JPred filters in FASTA
[TXT]jp_4NgABBO.full_MSA.fasta.withGaps.html2015-04-17 17:30 13KFull MSA before JPred filters in FASTA
[ ]jp_4NgABBO.hmm2015-04-17 17:30 19KHHMer2 profile of the alignment
[TXT]jp_4NgABBO.html2015-04-17 17:30 19KHTML prediction and alignment data
[ ]jp_4NgABBO.input2015-04-17 16:37 109 Raw input data for analysis
[ ]jp_4NgABBO.jalview2015-04-17 17:30 2.9KJalview annotation file for alignment
[ ]jp_4NgABBO.jnet2015-04-17 17:30 3.8KJnet secondary structure output
[TXT]jp_4NgABBO.profile2015-04-17 17:28 17KPSIBLAST profile from alignment
[ ]jp_4NgABBO.pssm2015-04-17 17:30 22KPSIBLAST PSSM for Jnet
[TXT]jp_4NgABBO.results.html2016-02-15 12:17 50KJPred results page
[TXT]jp_4NgABBO.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_4NgABBO.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_4NgABBO.seq2015-04-17 16:37 116 Sequence data file
[TXT]jp_4NgABBO.simple.html2015-04-17 17:30 1.1KBrief HTML: sequence and prediction only
[TXT]jp_4NgABBO.svg.html2015-04-17 17:30 42KJalview SVG summary of results
[ ]jp_4NgABBO.tar.gz2015-04-17 17:30 63KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.