JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:22 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1l5ja1.name2015-04-17 16:00 0 Job name flag file
[ ]jp_uBikx_4.align2015-04-17 16:22 57KPSIBLAST alignment in FASTA format
[TXT]jp_uBikx_4.als2015-04-17 16:22 2.8KAlscript command file for PS/PDF output
[ ]jp_uBikx_4.blast.gz2015-04-17 16:22 231KCompressed PSIBLAST output file
[TXT]jp_uBikx_4.coils.csv2015-04-17 16:22 1.0KCOILS output in CSV format
[ ]jp_uBikx_4.coilseq.lupas_142015-04-17 16:22 6.7KCOILS output, window length 14
[ ]jp_uBikx_4.coilseq.lupas_212015-04-17 16:22 6.7KCOILS output, window length 21
[ ]jp_uBikx_4.coilseq.lupas_282015-04-17 16:22 6.7KCOILS output, window length 28
[ ]jp_uBikx_4.concise2015-04-17 16:22 116KPrediction: coiled-coil, solvent, alignment
[ ]jp_uBikx_4.concise.blc2015-04-17 16:22 58KBLC format prediction and alignment data
[ ]jp_uBikx_4.concise.fasta2015-04-17 16:22 59KPrediction: coiled-coil, solvent, alignment
[ ]jp_uBikx_4.concise.pdf2015-04-17 16:22 382KPDF prediction and alignment data
[ ]jp_uBikx_4.concise.ps2015-04-17 16:22 7.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_uBikx_4.fasta2015-04-17 16:19 175 Input query sequence in FASTA format
[ ]jp_uBikx_4.full_MSA.fasta2015-04-17 16:22 253KFull MSA before JPred filters in FASTA
[TXT]jp_uBikx_4.full_MSA.fasta.noGaps.html2015-04-17 16:22 181KFull MSA before JPred filters in FASTA
[TXT]jp_uBikx_4.full_MSA.fasta.withGaps.html2015-04-17 16:22 1.1MFull MSA before JPred filters in FASTA
[ ]jp_uBikx_4.hmm2015-04-17 16:22 30KHHMer2 profile of the alignment
[TXT]jp_uBikx_4.html2015-04-17 16:22 136KHTML prediction and alignment data
[ ]jp_uBikx_4.input2015-04-17 16:00 167 Raw input data for analysis
[ ]jp_uBikx_4.jalview2015-04-17 16:22 4.1KJalview annotation file for alignment
[ ]jp_uBikx_4.jnet2015-04-17 16:22 5.9KJnet secondary structure output
[TXT]jp_uBikx_4.profile2015-04-17 16:21 26KPSIBLAST profile from alignment
[ ]jp_uBikx_4.pssm2015-04-17 16:22 34KPSIBLAST PSSM for Jnet
[TXT]jp_uBikx_4.results.html2016-02-15 12:17 75KJPred results page
[TXT]jp_uBikx_4.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_uBikx_4.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_uBikx_4.seq2015-04-17 16:00 175 Sequence data file
[TXT]jp_uBikx_4.simple.html2015-04-17 16:22 1.4KBrief HTML: sequence and prediction only
[TXT]jp_uBikx_4.svg.html2015-04-17 16:22 67KJalview SVG summary of results
[ ]jp_uBikx_4.tar.gz2015-04-17 16:22 809KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.