JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:29 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1m0ka_.name2015-04-17 16:38 0 Job name flag file
[ ]jp_dGJIq3i.align2015-04-17 17:29 45KPSIBLAST alignment in FASTA format
[TXT]jp_dGJIq3i.als2015-04-17 17:29 2.8KAlscript command file for PS/PDF output
[ ]jp_dGJIq3i.blast.gz2015-04-17 17:28 181KCompressed PSIBLAST output file
[TXT]jp_dGJIq3i.coils.csv2015-04-17 17:29 1.3KCOILS output in CSV format
[ ]jp_dGJIq3i.coilseq.lupas_142015-04-17 17:29 9.3KCOILS output, window length 14
[ ]jp_dGJIq3i.coilseq.lupas_212015-04-17 17:29 9.3KCOILS output, window length 21
[ ]jp_dGJIq3i.coilseq.lupas_282015-04-17 17:29 9.3KCOILS output, window length 28
[ ]jp_dGJIq3i.concise2015-04-17 17:29 95KPrediction: coiled-coil, solvent, alignment
[ ]jp_dGJIq3i.concise.blc2015-04-17 17:29 47KBLC format prediction and alignment data
[ ]jp_dGJIq3i.concise.fasta2015-04-17 17:29 47KPrediction: coiled-coil, solvent, alignment
[ ]jp_dGJIq3i.concise.pdf2015-04-17 17:29 319KPDF prediction and alignment data
[ ]jp_dGJIq3i.concise.ps2015-04-17 17:29 5.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_dGJIq3i.fasta2015-04-17 17:22 238 Input query sequence in FASTA format
[ ]jp_dGJIq3i.full_MSA.fasta2015-04-17 17:29 592KFull MSA before JPred filters in FASTA
[TXT]jp_dGJIq3i.full_MSA.fasta.noGaps.html2015-04-17 17:29 201KFull MSA before JPred filters in FASTA
[TXT]jp_dGJIq3i.full_MSA.fasta.withGaps.html2015-04-17 17:29 2.2MFull MSA before JPred filters in FASTA
[ ]jp_dGJIq3i.hmm2015-04-17 17:29 42KHHMer2 profile of the alignment
[TXT]jp_dGJIq3i.html2015-04-17 17:29 107KHTML prediction and alignment data
[ ]jp_dGJIq3i.input2015-04-17 16:38 229 Raw input data for analysis
[ ]jp_dGJIq3i.jalview2015-04-17 17:29 5.4KJalview annotation file for alignment
[ ]jp_dGJIq3i.jnet2015-04-17 17:29 8.1KJnet secondary structure output
[TXT]jp_dGJIq3i.profile2015-04-17 17:27 36KPSIBLAST profile from alignment
[ ]jp_dGJIq3i.pssm2015-04-17 17:29 48KPSIBLAST PSSM for Jnet
[TXT]jp_dGJIq3i.results.html2016-02-15 12:17 96KJPred results page
[TXT]jp_dGJIq3i.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_dGJIq3i.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_dGJIq3i.seq2015-04-17 16:38 238 Sequence data file
[TXT]jp_dGJIq3i.simple.html2015-04-17 17:29 1.5KBrief HTML: sequence and prediction only
[TXT]jp_dGJIq3i.svg.html2015-04-17 17:29 87KJalview SVG summary of results
[ ]jp_dGJIq3i.tar.gz2015-04-17 17:29 796KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.