JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:47 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1m1fa_.name2015-04-17 16:38 0 Job name flag file
[ ]jp_SHa3wDM.align2015-04-17 17:47 124KPSIBLAST alignment in FASTA format
[TXT]jp_SHa3wDM.als2015-04-17 17:47 2.4KAlscript command file for PS/PDF output
[ ]jp_SHa3wDM.blast.gz2015-04-17 17:46 1.0MCompressed PSIBLAST output file
[TXT]jp_SHa3wDM.coils.csv2015-04-17 17:47 672 COILS output in CSV format
[ ]jp_SHa3wDM.coilseq.lupas_142015-04-17 17:47 4.5KCOILS output, window length 14
[ ]jp_SHa3wDM.coilseq.lupas_212015-04-17 17:47 4.5KCOILS output, window length 21
[ ]jp_SHa3wDM.coilseq.lupas_282015-04-17 17:47 4.5KCOILS output, window length 28
[ ]jp_SHa3wDM.concise2015-04-17 17:47 239KPrediction: coiled-coil, solvent, alignment
[ ]jp_SHa3wDM.concise.blc2015-04-17 17:47 123KBLC format prediction and alignment data
[ ]jp_SHa3wDM.concise.fasta2015-04-17 17:47 125KPrediction: coiled-coil, solvent, alignment
[ ]jp_SHa3wDM.concise.pdf2015-04-17 17:47 864KPDF prediction and alignment data
[ ]jp_SHa3wDM.concise.ps2015-04-17 17:47 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_SHa3wDM.fasta2015-04-17 17:22 121 Input query sequence in FASTA format
[ ]jp_SHa3wDM.full_MSA.fasta2015-04-17 17:46 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_SHa3wDM.full_MSA.fasta.noGaps.html2015-04-17 17:47 615KFull MSA before JPred filters in FASTA
[TXT]jp_SHa3wDM.full_MSA.fasta.withGaps.html2015-04-17 17:47 7.7MFull MSA before JPred filters in FASTA
[ ]jp_SHa3wDM.hmm2015-04-17 17:47 20KHHMer2 profile of the alignment
[TXT]jp_SHa3wDM.html2015-04-17 17:47 324KHTML prediction and alignment data
[ ]jp_SHa3wDM.input2015-04-17 16:38 114 Raw input data for analysis
[ ]jp_SHa3wDM.jalview2015-04-17 17:47 2.9KJalview annotation file for alignment
[ ]jp_SHa3wDM.jnet2015-04-17 17:47 4.0KJnet secondary structure output
[TXT]jp_SHa3wDM.profile2015-04-17 17:43 17KPSIBLAST profile from alignment
[ ]jp_SHa3wDM.pssm2015-04-17 17:47 23KPSIBLAST PSSM for Jnet
[TXT]jp_SHa3wDM.results.html2016-02-15 12:17 53KJPred results page
[TXT]jp_SHa3wDM.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_SHa3wDM.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_SHa3wDM.seq2015-04-17 16:38 121 Sequence data file
[TXT]jp_SHa3wDM.simple.html2015-04-17 17:47 1.3KBrief HTML: sequence and prediction only
[TXT]jp_SHa3wDM.svg.html2015-04-17 17:47 45KJalview SVG summary of results
[ ]jp_SHa3wDM.tar.gz2015-04-17 17:47 2.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.