JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:27 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1n4wa2.name2015-04-17 15:24 0 Job name flag file
[ ]jp_3Rf9T21.align2015-04-17 15:27 21KPSIBLAST alignment in FASTA format
[TXT]jp_3Rf9T21.als2015-04-17 15:27 2.3KAlscript command file for PS/PDF output
[ ]jp_3Rf9T21.blast.gz2015-04-17 15:27 64KCompressed PSIBLAST output file
[TXT]jp_3Rf9T21.coils.csv2015-04-17 15:27 822 COILS output in CSV format
[ ]jp_3Rf9T21.coilseq.lupas_142015-04-17 15:27 5.5KCOILS output, window length 14
[ ]jp_3Rf9T21.coilseq.lupas_212015-04-17 15:27 5.5KCOILS output, window length 21
[ ]jp_3Rf9T21.coilseq.lupas_282015-04-17 15:27 5.5KCOILS output, window length 28
[ ]jp_3Rf9T21.concise2015-04-17 15:27 46KPrediction: coiled-coil, solvent, alignment
[ ]jp_3Rf9T21.concise.blc2015-04-17 15:27 23KBLC format prediction and alignment data
[ ]jp_3Rf9T21.concise.fasta2015-04-17 15:27 23KPrediction: coiled-coil, solvent, alignment
[ ]jp_3Rf9T21.concise.pdf2015-04-17 15:27 149KPDF prediction and alignment data
[ ]jp_3Rf9T21.concise.ps2015-04-17 15:27 2.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_3Rf9T21.fasta2015-04-17 15:24 146 Input query sequence in FASTA format
[ ]jp_3Rf9T21.full_MSA.fasta2015-04-17 15:27 81KFull MSA before JPred filters in FASTA
[TXT]jp_3Rf9T21.full_MSA.fasta.noGaps.html2015-04-17 15:27 59KFull MSA before JPred filters in FASTA
[TXT]jp_3Rf9T21.full_MSA.fasta.withGaps.html2015-04-17 15:27 419KFull MSA before JPred filters in FASTA
[ ]jp_3Rf9T21.hmm2015-04-17 15:27 25KHHMer2 profile of the alignment
[TXT]jp_3Rf9T21.html2015-04-17 15:27 61KHTML prediction and alignment data
[ ]jp_3Rf9T21.input2015-04-17 15:24 139 Raw input data for analysis
[ ]jp_3Rf9T21.jalview2015-04-17 15:27 3.4KJalview annotation file for alignment
[ ]jp_3Rf9T21.jnet2015-04-17 15:27 4.9KJnet secondary structure output
[TXT]jp_3Rf9T21.profile2015-04-17 15:26 21KPSIBLAST profile from alignment
[ ]jp_3Rf9T21.pssm2015-04-17 15:27 28KPSIBLAST PSSM for Jnet
[TXT]jp_3Rf9T21.results.html2016-02-15 12:17 61KJPred results page
[TXT]jp_3Rf9T21.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_3Rf9T21.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_3Rf9T21.seq2015-04-17 15:24 146 Sequence data file
[TXT]jp_3Rf9T21.simple.html2015-04-17 15:27 1.3KBrief HTML: sequence and prediction only
[TXT]jp_3Rf9T21.svg.html2015-04-17 15:27 52KJalview SVG summary of results
[ ]jp_3Rf9T21.tar.gz2015-04-17 15:27 321KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.