JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:28 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1n5ua1.name2015-04-17 15:25 0 Job name flag file
[ ]jp_tqE05X3.align2015-04-17 15:27 147KPSIBLAST alignment in FASTA format
[TXT]jp_tqE05X3.als2015-04-17 15:27 2.5KAlscript command file for PS/PDF output
[ ]jp_tqE05X3.blast.gz2015-04-17 15:27 435KCompressed PSIBLAST output file
[TXT]jp_tqE05X3.coils.csv2015-04-17 15:27 1.2KCOILS output in CSV format
[ ]jp_tqE05X3.coilseq.lupas_142015-04-17 15:27 8.2KCOILS output, window length 14
[ ]jp_tqE05X3.coilseq.lupas_212015-04-17 15:27 8.2KCOILS output, window length 21
[ ]jp_tqE05X3.coilseq.lupas_282015-04-17 15:27 8.2KCOILS output, window length 28
[ ]jp_tqE05X3.concise2015-04-17 15:27 290KPrediction: coiled-coil, solvent, alignment
[ ]jp_tqE05X3.concise.blc2015-04-17 15:27 148KBLC format prediction and alignment data
[ ]jp_tqE05X3.concise.fasta2015-04-17 15:27 150KPrediction: coiled-coil, solvent, alignment
[ ]jp_tqE05X3.concise.pdf2015-04-17 15:28 820KPDF prediction and alignment data
[ ]jp_tqE05X3.concise.ps2015-04-17 15:27 17MPrediction: coiled-coil, solvent, alignment
[ ]jp_tqE05X3.fasta2015-04-17 15:25 210 Input query sequence in FASTA format
[ ]jp_tqE05X3.full_MSA.fasta2015-04-17 15:27 843KFull MSA before JPred filters in FASTA
[TXT]jp_tqE05X3.full_MSA.fasta.noGaps.html2015-04-17 15:28 306KFull MSA before JPred filters in FASTA
[TXT]jp_tqE05X3.full_MSA.fasta.withGaps.html2015-04-17 15:28 3.1MFull MSA before JPred filters in FASTA
[ ]jp_tqE05X3.hmm2015-04-17 15:27 37KHHMer2 profile of the alignment
[TXT]jp_tqE05X3.html2015-04-17 15:27 297KHTML prediction and alignment data
[ ]jp_tqE05X3.input2015-04-17 15:25 202 Raw input data for analysis
[ ]jp_tqE05X3.jalview2015-04-17 15:27 4.8KJalview annotation file for alignment
[ ]jp_tqE05X3.jnet2015-04-17 15:27 7.2KJnet secondary structure output
[TXT]jp_tqE05X3.profile2015-04-17 15:26 31KPSIBLAST profile from alignment
[ ]jp_tqE05X3.pssm2015-04-17 15:27 42KPSIBLAST PSSM for Jnet
[TXT]jp_tqE05X3.results.html2016-02-15 12:17 86KJPred results page
[TXT]jp_tqE05X3.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_tqE05X3.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_tqE05X3.seq2015-04-17 15:25 210 Sequence data file
[TXT]jp_tqE05X3.simple.html2015-04-17 15:27 1.5KBrief HTML: sequence and prediction only
[TXT]jp_tqE05X3.svg.html2015-04-17 15:28 78KJalview SVG summary of results
[ ]jp_tqE05X3.tar.gz2015-04-17 15:28 1.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.