JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:27 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1n62c1.name2015-04-17 16:02 0 Job name flag file
[ ]jp_wjaxbV4.align2015-04-17 16:26 123KPSIBLAST alignment in FASTA format
[TXT]jp_wjaxbV4.als2015-04-17 16:26 2.2KAlscript command file for PS/PDF output
[ ]jp_wjaxbV4.blast.gz2015-04-17 16:26 1.6MCompressed PSIBLAST output file
[TXT]jp_wjaxbV4.coils.csv2015-04-17 16:26 684 COILS output in CSV format
[ ]jp_wjaxbV4.coilseq.lupas_142015-04-17 16:26 4.6KCOILS output, window length 14
[ ]jp_wjaxbV4.coilseq.lupas_212015-04-17 16:26 4.6KCOILS output, window length 21
[ ]jp_wjaxbV4.coilseq.lupas_282015-04-17 16:26 4.6KCOILS output, window length 28
[ ]jp_wjaxbV4.concise2015-04-17 16:26 238KPrediction: coiled-coil, solvent, alignment
[ ]jp_wjaxbV4.concise.blc2015-04-17 16:26 123KBLC format prediction and alignment data
[ ]jp_wjaxbV4.concise.fasta2015-04-17 16:26 125KPrediction: coiled-coil, solvent, alignment
[ ]jp_wjaxbV4.concise.pdf2015-04-17 16:27 794KPDF prediction and alignment data
[ ]jp_wjaxbV4.concise.ps2015-04-17 16:26 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_wjaxbV4.fasta2015-04-17 16:22 123 Input query sequence in FASTA format
[ ]jp_wjaxbV4.full_MSA.fasta2015-04-17 16:26 3.2MFull MSA before JPred filters in FASTA
[TXT]jp_wjaxbV4.full_MSA.fasta.noGaps.html2015-04-17 16:27 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_wjaxbV4.full_MSA.fasta.withGaps.html2015-04-17 16:27 14MFull MSA before JPred filters in FASTA
[ ]jp_wjaxbV4.hmm2015-04-17 16:26 20KHHMer2 profile of the alignment
[TXT]jp_wjaxbV4.html2015-04-17 16:26 323KHTML prediction and alignment data
[ ]jp_wjaxbV4.input2015-04-17 16:02 116 Raw input data for analysis
[ ]jp_wjaxbV4.jalview2015-04-17 16:26 3.0KJalview annotation file for alignment
[ ]jp_wjaxbV4.jnet2015-04-17 16:26 4.0KJnet secondary structure output
[TXT]jp_wjaxbV4.profile2015-04-17 16:25 18KPSIBLAST profile from alignment
[ ]jp_wjaxbV4.pssm2015-04-17 16:26 23KPSIBLAST PSSM for Jnet
[TXT]jp_wjaxbV4.results.html2016-02-15 12:17 53KJPred results page
[TXT]jp_wjaxbV4.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_wjaxbV4.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_wjaxbV4.seq2015-04-17 16:02 123 Sequence data file
[TXT]jp_wjaxbV4.simple.html2015-04-17 16:26 1.2KBrief HTML: sequence and prediction only
[TXT]jp_wjaxbV4.svg.html2015-04-17 16:27 45KJalview SVG summary of results
[ ]jp_wjaxbV4.tar.gz2015-04-17 16:27 4.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.