JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:33 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1n62c2.name2015-04-17 16:02 0 Job name flag file
[ ]jp_YX34XPY.align2015-04-17 16:32 164KPSIBLAST alignment in FASTA format
[TXT]jp_YX34XPY.als2015-04-17 16:32 3.7KAlscript command file for PS/PDF output
[ ]jp_YX34XPY.blast.gz2015-04-17 16:30 5.5MCompressed PSIBLAST output file
[TXT]jp_YX34XPY.coils.csv2015-04-17 16:32 1.1KCOILS output in CSV format
[ ]jp_YX34XPY.coilseq.lupas_142015-04-17 16:32 7.4KCOILS output, window length 14
[ ]jp_YX34XPY.coilseq.lupas_212015-04-17 16:32 7.4KCOILS output, window length 21
[ ]jp_YX34XPY.coilseq.lupas_282015-04-17 16:32 7.4KCOILS output, window length 28
[ ]jp_YX34XPY.concise2015-04-17 16:32 323KPrediction: coiled-coil, solvent, alignment
[ ]jp_YX34XPY.concise.blc2015-04-17 16:32 165KBLC format prediction and alignment data
[ ]jp_YX34XPY.concise.fasta2015-04-17 16:32 166KPrediction: coiled-coil, solvent, alignment
[ ]jp_YX34XPY.concise.pdf2015-04-17 16:32 1.2MPDF prediction and alignment data
[ ]jp_YX34XPY.concise.ps2015-04-17 16:32 20MPrediction: coiled-coil, solvent, alignment
[ ]jp_YX34XPY.fasta2015-04-17 16:22 192 Input query sequence in FASTA format
[ ]jp_YX34XPY.full_MSA.fasta2015-04-17 16:31 12MFull MSA before JPred filters in FASTA
[TXT]jp_YX34XPY.full_MSA.fasta.noGaps.html2015-04-17 16:33 1.6MFull MSA before JPred filters in FASTA
[TXT]jp_YX34XPY.full_MSA.fasta.withGaps.html2015-04-17 16:33 33MFull MSA before JPred filters in FASTA
[ ]jp_YX34XPY.hmm2015-04-17 16:32 33KHHMer2 profile of the alignment
[TXT]jp_YX34XPY.html2015-04-17 16:32 344KHTML prediction and alignment data
[ ]jp_YX34XPY.input2015-04-17 16:02 184 Raw input data for analysis
[ ]jp_YX34XPY.jalview2015-04-17 16:32 4.4KJalview annotation file for alignment
[ ]jp_YX34XPY.jnet2015-04-17 16:32 6.5KJnet secondary structure output
[TXT]jp_YX34XPY.profile2015-04-17 16:28 29KPSIBLAST profile from alignment
[ ]jp_YX34XPY.pssm2015-04-17 16:32 38KPSIBLAST PSSM for Jnet
[TXT]jp_YX34XPY.results.html2016-02-15 12:17 82KJPred results page
[TXT]jp_YX34XPY.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_YX34XPY.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_YX34XPY.seq2015-04-17 16:02 192 Sequence data file
[TXT]jp_YX34XPY.simple.html2015-04-17 16:32 1.6KBrief HTML: sequence and prediction only
[TXT]jp_YX34XPY.svg.html2015-04-17 16:33 74KJalview SVG summary of results
[ ]jp_YX34XPY.tar.gz2015-04-17 16:33 10MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.