JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:29 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nc7a_.name2015-04-17 19:06 0 Job name flag file
[ ]jp_a03_iNZ.align2015-04-17 21:29 12KPSIBLAST alignment in FASTA format
[TXT]jp_a03_iNZ.als2015-04-17 21:29 2.6KAlscript command file for PS/PDF output
[ ]jp_a03_iNZ.blast.gz2015-04-17 21:29 38KCompressed PSIBLAST output file
[TXT]jp_a03_iNZ.coils.csv2015-04-17 21:29 726 COILS output in CSV format
[ ]jp_a03_iNZ.coilseq.lupas_142015-04-17 21:29 4.9KCOILS output, window length 14
[ ]jp_a03_iNZ.coilseq.lupas_212015-04-17 21:29 4.9KCOILS output, window length 21
[ ]jp_a03_iNZ.coilseq.lupas_282015-04-17 21:29 4.9KCOILS output, window length 28
[ ]jp_a03_iNZ.concise2015-04-17 21:29 28KPrediction: coiled-coil, solvent, alignment
[ ]jp_a03_iNZ.concise.blc2015-04-17 21:29 14KBLC format prediction and alignment data
[ ]jp_a03_iNZ.concise.fasta2015-04-17 21:29 13KPrediction: coiled-coil, solvent, alignment
[ ]jp_a03_iNZ.concise.pdf2015-04-17 21:29 89KPDF prediction and alignment data
[ ]jp_a03_iNZ.concise.ps2015-04-17 21:29 1.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_a03_iNZ.fasta2015-04-17 21:25 130 Input query sequence in FASTA format
[ ]jp_a03_iNZ.full_MSA.fasta2015-04-17 21:29 32KFull MSA before JPred filters in FASTA
[TXT]jp_a03_iNZ.full_MSA.fasta.noGaps.html2015-04-17 21:29 32KFull MSA before JPred filters in FASTA
[TXT]jp_a03_iNZ.full_MSA.fasta.withGaps.html2015-04-17 21:29 160KFull MSA before JPred filters in FASTA
[ ]jp_a03_iNZ.hmm2015-04-17 21:29 22KHHMer2 profile of the alignment
[TXT]jp_a03_iNZ.html2015-04-17 21:29 41KHTML prediction and alignment data
[ ]jp_a03_iNZ.input2015-04-17 19:06 123 Raw input data for analysis
[ ]jp_a03_iNZ.jalview2015-04-17 21:29 3.1KJalview annotation file for alignment
[ ]jp_a03_iNZ.jnet2015-04-17 21:29 4.3KJnet secondary structure output
[TXT]jp_a03_iNZ.profile2015-04-17 21:28 19KPSIBLAST profile from alignment
[ ]jp_a03_iNZ.pssm2015-04-17 21:29 25KPSIBLAST PSSM for Jnet
[TXT]jp_a03_iNZ.results.html2016-02-15 12:17 56KJPred results page
[TXT]jp_a03_iNZ.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_a03_iNZ.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_a03_iNZ.seq2015-04-17 19:06 130 Sequence data file
[TXT]jp_a03_iNZ.simple.html2015-04-17 21:29 1.3KBrief HTML: sequence and prediction only
[TXT]jp_a03_iNZ.svg.html2015-04-17 21:29 48KJalview SVG summary of results
[ ]jp_a03_iNZ.tar.gz2015-04-17 21:29 196KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.