JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:24 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nh2b_.name2015-04-17 16:39 0 Job name flag file
[ ]jp_6PFKMKy.align2015-04-17 17:24 12KPSIBLAST alignment in FASTA format
[TXT]jp_6PFKMKy.als2015-04-17 17:24 1.4KAlscript command file for PS/PDF output
[ ]jp_6PFKMKy.blast.gz2015-04-17 17:24 51KCompressed PSIBLAST output file
[TXT]jp_6PFKMKy.coils.csv2015-04-17 17:24 306 COILS output in CSV format
[ ]jp_6PFKMKy.coilseq.lupas_142015-04-17 17:24 1.9KCOILS output, window length 14
[ ]jp_6PFKMKy.coilseq.lupas_212015-04-17 17:24 1.9KCOILS output, window length 21
[ ]jp_6PFKMKy.coilseq.lupas_282015-04-17 17:24 1.9KCOILS output, window length 28
[ ]jp_6PFKMKy.concise2015-04-17 17:24 24KPrediction: coiled-coil, solvent, alignment
[ ]jp_6PFKMKy.concise.blc2015-04-17 17:24 12KBLC format prediction and alignment data
[ ]jp_6PFKMKy.concise.fasta2015-04-17 17:24 12KPrediction: coiled-coil, solvent, alignment
[ ]jp_6PFKMKy.concise.pdf2015-04-17 17:24 73KPDF prediction and alignment data
[ ]jp_6PFKMKy.concise.ps2015-04-17 17:24 1.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_6PFKMKy.fasta2015-04-17 17:22 59 Input query sequence in FASTA format
[ ]jp_6PFKMKy.full_MSA.fasta2015-04-17 17:24 45KFull MSA before JPred filters in FASTA
[TXT]jp_6PFKMKy.full_MSA.fasta.noGaps.html2015-04-17 17:24 88KFull MSA before JPred filters in FASTA
[TXT]jp_6PFKMKy.full_MSA.fasta.withGaps.html2015-04-17 17:24 211KFull MSA before JPred filters in FASTA
[ ]jp_6PFKMKy.hmm2015-04-17 17:24 8.6KHHMer2 profile of the alignment
[TXT]jp_6PFKMKy.html2015-04-17 17:24 55KHTML prediction and alignment data
[ ]jp_6PFKMKy.input2015-04-17 16:39 53 Raw input data for analysis
[ ]jp_6PFKMKy.jalview2015-04-17 17:24 1.8KJalview annotation file for alignment
[ ]jp_6PFKMKy.jnet2015-04-17 17:24 1.8KJnet secondary structure output
[TXT]jp_6PFKMKy.profile2015-04-17 17:23 7.8KPSIBLAST profile from alignment
[ ]jp_6PFKMKy.pssm2015-04-17 17:24 9.9KPSIBLAST PSSM for Jnet
[TXT]jp_6PFKMKy.results.html2016-02-15 12:17 29KJPred results page
[TXT]jp_6PFKMKy.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_6PFKMKy.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_6PFKMKy.seq2015-04-17 16:39 59 Sequence data file
[TXT]jp_6PFKMKy.simple.html2015-04-17 17:24 1.0KBrief HTML: sequence and prediction only
[TXT]jp_6PFKMKy.svg.html2015-04-17 17:24 21KJalview SVG summary of results
[ ]jp_6PFKMKy.tar.gz2015-04-17 17:24 188KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.