JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:36 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nkia_.name2015-04-17 19:07 0 Job name flag file
[ ]jp_kS1e2ie.align2015-04-17 21:36 143KPSIBLAST alignment in FASTA format
[TXT]jp_kS1e2ie.als2015-04-17 21:36 2.8KAlscript command file for PS/PDF output
[ ]jp_kS1e2ie.blast.gz2015-04-17 21:34 8.3MCompressed PSIBLAST output file
[TXT]jp_kS1e2ie.coils.csv2015-04-17 21:36 834 COILS output in CSV format
[ ]jp_kS1e2ie.coilseq.lupas_142015-04-17 21:36 5.6KCOILS output, window length 14
[ ]jp_kS1e2ie.coilseq.lupas_212015-04-17 21:36 5.6KCOILS output, window length 21
[ ]jp_kS1e2ie.coilseq.lupas_282015-04-17 21:36 5.6KCOILS output, window length 28
[ ]jp_kS1e2ie.concise2015-04-17 21:36 279KPrediction: coiled-coil, solvent, alignment
[ ]jp_kS1e2ie.concise.blc2015-04-17 21:36 144KBLC format prediction and alignment data
[ ]jp_kS1e2ie.concise.fasta2015-04-17 21:36 145KPrediction: coiled-coil, solvent, alignment
[ ]jp_kS1e2ie.concise.pdf2015-04-17 21:36 1.0MPDF prediction and alignment data
[ ]jp_kS1e2ie.concise.ps2015-04-17 21:36 17MPrediction: coiled-coil, solvent, alignment
[ ]jp_kS1e2ie.fasta2015-04-17 21:25 148 Input query sequence in FASTA format
[ ]jp_kS1e2ie.full_MSA.fasta2015-04-17 21:35 20MFull MSA before JPred filters in FASTA
[TXT]jp_kS1e2ie.full_MSA.fasta.noGaps.html2015-04-17 21:36 2.7MFull MSA before JPred filters in FASTA
[TXT]jp_kS1e2ie.full_MSA.fasta.withGaps.html2015-04-17 21:36 51MFull MSA before JPred filters in FASTA
[ ]jp_kS1e2ie.hmm2015-04-17 21:36 25KHHMer2 profile of the alignment
[TXT]jp_kS1e2ie.html2015-04-17 21:36 338KHTML prediction and alignment data
[ ]jp_kS1e2ie.input2015-04-17 19:07 141 Raw input data for analysis
[ ]jp_kS1e2ie.jalview2015-04-17 21:36 3.5KJalview annotation file for alignment
[ ]jp_kS1e2ie.jnet2015-04-17 21:36 5.0KJnet secondary structure output
[TXT]jp_kS1e2ie.profile2015-04-17 21:33 22KPSIBLAST profile from alignment
[ ]jp_kS1e2ie.pssm2015-04-17 21:36 29KPSIBLAST PSSM for Jnet
[TXT]jp_kS1e2ie.results.html2016-02-15 12:17 64KJPred results page
[TXT]jp_kS1e2ie.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_kS1e2ie.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_kS1e2ie.seq2015-04-17 19:07 148 Sequence data file
[TXT]jp_kS1e2ie.simple.html2015-04-17 21:36 1.4KBrief HTML: sequence and prediction only
[TXT]jp_kS1e2ie.svg.html2015-04-17 21:36 55KJalview SVG summary of results
[ ]jp_kS1e2ie.tar.gz2015-04-17 21:36 15MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.