JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:30 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nkpa_.name2015-04-17 19:07 0 Job name flag file
[ ]jp_6GTmtJe.align2015-04-17 21:29 50KPSIBLAST alignment in FASTA format
[TXT]jp_6GTmtJe.als2015-04-17 21:29 1.4KAlscript command file for PS/PDF output
[ ]jp_6GTmtJe.blast.gz2015-04-17 21:28 4.2MCompressed PSIBLAST output file
[TXT]jp_6GTmtJe.coils.csv2015-04-17 21:29 558 COILS output in CSV format
[ ]jp_6GTmtJe.coilseq.lupas_142015-04-17 21:29 3.7KCOILS output, window length 14
[ ]jp_6GTmtJe.coilseq.lupas_212015-04-17 21:29 3.7KCOILS output, window length 21
[ ]jp_6GTmtJe.coilseq.lupas_282015-04-17 21:29 3.7KCOILS output, window length 28
[ ]jp_6GTmtJe.concise2015-04-17 21:29 97KPrediction: coiled-coil, solvent, alignment
[ ]jp_6GTmtJe.concise.blc2015-04-17 21:29 50KBLC format prediction and alignment data
[ ]jp_6GTmtJe.concise.fasta2015-04-17 21:29 51KPrediction: coiled-coil, solvent, alignment
[ ]jp_6GTmtJe.concise.pdf2015-04-17 21:29 287KPDF prediction and alignment data
[ ]jp_6GTmtJe.concise.ps2015-04-17 21:29 5.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_6GTmtJe.fasta2015-04-17 21:26 102 Input query sequence in FASTA format
[ ]jp_6GTmtJe.full_MSA.fasta2015-04-17 21:29 14MFull MSA before JPred filters in FASTA
[TXT]jp_6GTmtJe.full_MSA.fasta.noGaps.html2015-04-17 21:29 2.1MFull MSA before JPred filters in FASTA
[TXT]jp_6GTmtJe.full_MSA.fasta.withGaps.html2015-04-17 21:29 34MFull MSA before JPred filters in FASTA
[ ]jp_6GTmtJe.hmm2015-04-17 21:29 17KHHMer2 profile of the alignment
[TXT]jp_6GTmtJe.html2015-04-17 21:29 152KHTML prediction and alignment data
[ ]jp_6GTmtJe.input2015-04-17 19:07 95 Raw input data for analysis
[ ]jp_6GTmtJe.jalview2015-04-17 21:29 2.7KJalview annotation file for alignment
[ ]jp_6GTmtJe.jnet2015-04-17 21:29 3.3KJnet secondary structure output
[TXT]jp_6GTmtJe.profile2015-04-17 21:27 14KPSIBLAST profile from alignment
[ ]jp_6GTmtJe.pssm2015-04-17 21:29 19KPSIBLAST PSSM for Jnet
[TXT]jp_6GTmtJe.results.html2016-02-15 12:17 43KJPred results page
[TXT]jp_6GTmtJe.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_6GTmtJe.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_6GTmtJe.seq2015-04-17 19:07 102 Sequence data file
[TXT]jp_6GTmtJe.simple.html2015-04-17 21:29 1.1KBrief HTML: sequence and prediction only
[TXT]jp_6GTmtJe.svg.html2015-04-17 21:29 35KJalview SVG summary of results
[ ]jp_6GTmtJe.tar.gz2015-04-17 21:30 7.0MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.