JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:27 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nlqa_.name2015-04-17 17:16 0 Job name flag file
[ ]jp__Paf8WS.align2015-04-17 18:27 33KPSIBLAST alignment in FASTA format
[TXT]jp__Paf8WS.als2015-04-17 18:27 2.4KAlscript command file for PS/PDF output
[ ]jp__Paf8WS.blast.gz2015-04-17 18:27 148KCompressed PSIBLAST output file
[TXT]jp__Paf8WS.coils.csv2015-04-17 18:27 660 COILS output in CSV format
[ ]jp__Paf8WS.coilseq.lupas_142015-04-17 18:27 4.4KCOILS output, window length 14
[ ]jp__Paf8WS.coilseq.lupas_212015-04-17 18:27 4.4KCOILS output, window length 21
[ ]jp__Paf8WS.coilseq.lupas_282015-04-17 18:27 4.4KCOILS output, window length 28
[ ]jp__Paf8WS.concise2015-04-17 18:27 67KPrediction: coiled-coil, solvent, alignment
[ ]jp__Paf8WS.concise.blc2015-04-17 18:27 34KBLC format prediction and alignment data
[ ]jp__Paf8WS.concise.fasta2015-04-17 18:27 34KPrediction: coiled-coil, solvent, alignment
[ ]jp__Paf8WS.concise.pdf2015-04-17 18:27 223KPDF prediction and alignment data
[ ]jp__Paf8WS.concise.ps2015-04-17 18:27 3.9MPrediction: coiled-coil, solvent, alignment
[ ]jp__Paf8WS.fasta2015-04-17 18:23 119 Input query sequence in FASTA format
[ ]jp__Paf8WS.full_MSA.fasta2015-04-17 18:27 288KFull MSA before JPred filters in FASTA
[TXT]jp__Paf8WS.full_MSA.fasta.noGaps.html2015-04-17 18:27 134KFull MSA before JPred filters in FASTA
[TXT]jp__Paf8WS.full_MSA.fasta.withGaps.html2015-04-17 18:27 1.3MFull MSA before JPred filters in FASTA
[ ]jp__Paf8WS.hmm2015-04-17 18:27 20KHHMer2 profile of the alignment
[TXT]jp__Paf8WS.html2015-04-17 18:27 96KHTML prediction and alignment data
[ ]jp__Paf8WS.input2015-04-17 17:16 112 Raw input data for analysis
[ ]jp__Paf8WS.jalview2015-04-17 18:27 2.9KJalview annotation file for alignment
[ ]jp__Paf8WS.jnet2015-04-17 18:27 3.9KJnet secondary structure output
[TXT]jp__Paf8WS.profile2015-04-17 18:26 17KPSIBLAST profile from alignment
[ ]jp__Paf8WS.pssm2015-04-17 18:27 23KPSIBLAST PSSM for Jnet
[TXT]jp__Paf8WS.results.html2016-02-15 12:17 51KJPred results page
[TXT]jp__Paf8WS.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp__Paf8WS.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp__Paf8WS.seq2015-04-17 17:16 119 Sequence data file
[TXT]jp__Paf8WS.simple.html2015-04-17 18:27 1.3KBrief HTML: sequence and prediction only
[TXT]jp__Paf8WS.svg.html2015-04-17 18:27 43KJalview SVG summary of results
[ ]jp__Paf8WS.tar.gz2015-04-17 18:27 546KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.