JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:26 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nqua_.name2015-04-17 18:28 0 Job name flag file
[ ]jp_STyfQ12.align2015-04-17 20:26 120KPSIBLAST alignment in FASTA format
[TXT]jp_STyfQ12.als2015-04-17 20:26 2.7KAlscript command file for PS/PDF output
[ ]jp_STyfQ12.blast.gz2015-04-17 20:25 1.8MCompressed PSIBLAST output file
[TXT]jp_STyfQ12.coils.csv2015-04-17 20:26 954 COILS output in CSV format
[ ]jp_STyfQ12.coilseq.lupas_142015-04-17 20:26 6.5KCOILS output, window length 14
[ ]jp_STyfQ12.coilseq.lupas_212015-04-17 20:26 6.5KCOILS output, window length 21
[ ]jp_STyfQ12.coilseq.lupas_282015-04-17 20:26 6.5KCOILS output, window length 28
[ ]jp_STyfQ12.concise2015-04-17 20:26 235KPrediction: coiled-coil, solvent, alignment
[ ]jp_STyfQ12.concise.blc2015-04-17 20:26 120KBLC format prediction and alignment data
[ ]jp_STyfQ12.concise.fasta2015-04-17 20:26 121KPrediction: coiled-coil, solvent, alignment
[ ]jp_STyfQ12.concise.pdf2015-04-17 20:26 790KPDF prediction and alignment data
[ ]jp_STyfQ12.concise.ps2015-04-17 20:26 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_STyfQ12.fasta2015-04-17 20:22 169 Input query sequence in FASTA format
[ ]jp_STyfQ12.full_MSA.fasta2015-04-17 20:25 3.1MFull MSA before JPred filters in FASTA
[TXT]jp_STyfQ12.full_MSA.fasta.noGaps.html2015-04-17 20:26 886KFull MSA before JPred filters in FASTA
[TXT]jp_STyfQ12.full_MSA.fasta.withGaps.html2015-04-17 20:26 9.5MFull MSA before JPred filters in FASTA
[ ]jp_STyfQ12.hmm2015-04-17 20:26 29KHHMer2 profile of the alignment
[TXT]jp_STyfQ12.html2015-04-17 20:26 272KHTML prediction and alignment data
[ ]jp_STyfQ12.input2015-04-17 18:28 161 Raw input data for analysis
[ ]jp_STyfQ12.jalview2015-04-17 20:26 4.0KJalview annotation file for alignment
[ ]jp_STyfQ12.jnet2015-04-17 20:26 5.7KJnet secondary structure output
[TXT]jp_STyfQ12.profile2015-04-17 20:24 25KPSIBLAST profile from alignment
[ ]jp_STyfQ12.pssm2015-04-17 20:26 33KPSIBLAST PSSM for Jnet
[TXT]jp_STyfQ12.results.html2016-02-15 12:17 71KJPred results page
[TXT]jp_STyfQ12.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_STyfQ12.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_STyfQ12.seq2015-04-17 18:28 169 Sequence data file
[TXT]jp_STyfQ12.simple.html2015-04-17 20:26 1.4KBrief HTML: sequence and prediction only
[TXT]jp_STyfQ12.svg.html2015-04-17 20:26 63KJalview SVG summary of results
[ ]jp_STyfQ12.tar.gz2015-04-17 20:26 3.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.