JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:37 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1ntya1.name2015-04-17 16:40 0 Job name flag file
[ ]jp_83rYVHz.align2015-04-17 17:35 119KPSIBLAST alignment in FASTA format
[TXT]jp_83rYVHz.als2015-04-17 17:35 2.5KAlscript command file for PS/PDF output
[ ]jp_83rYVHz.blast.gz2015-04-17 17:32 18MCompressed PSIBLAST output file
[TXT]jp_83rYVHz.coils.csv2015-04-17 17:35 1.1KCOILS output in CSV format
[ ]jp_83rYVHz.coilseq.lupas_142015-04-17 17:35 7.7KCOILS output, window length 14
[ ]jp_83rYVHz.coilseq.lupas_212015-04-17 17:35 7.7KCOILS output, window length 21
[ ]jp_83rYVHz.coilseq.lupas_282015-04-17 17:35 7.7KCOILS output, window length 28
[ ]jp_83rYVHz.concise2015-04-17 17:35 236KPrediction: coiled-coil, solvent, alignment
[ ]jp_83rYVHz.concise.blc2015-04-17 17:35 120KBLC format prediction and alignment data
[ ]jp_83rYVHz.concise.fasta2015-04-17 17:35 121KPrediction: coiled-coil, solvent, alignment
[ ]jp_83rYVHz.concise.pdf2015-04-17 17:35 883KPDF prediction and alignment data
[ ]jp_83rYVHz.concise.ps2015-04-17 17:35 15MPrediction: coiled-coil, solvent, alignment
[ ]jp_83rYVHz.fasta2015-04-17 17:23 199 Input query sequence in FASTA format
[ ]jp_83rYVHz.full_MSA.fasta2015-04-17 17:34 31MFull MSA before JPred filters in FASTA
[TXT]jp_83rYVHz.full_MSA.fasta.noGaps.html2015-04-17 17:37 2.7MFull MSA before JPred filters in FASTA
[TXT]jp_83rYVHz.full_MSA.fasta.withGaps.html2015-04-17 17:37 68MFull MSA before JPred filters in FASTA
[ ]jp_83rYVHz.hmm2015-04-17 17:35 35KHHMer2 profile of the alignment
[TXT]jp_83rYVHz.html2015-04-17 17:35 250KHTML prediction and alignment data
[ ]jp_83rYVHz.input2015-04-17 16:40 191 Raw input data for analysis
[ ]jp_83rYVHz.jalview2015-04-17 17:35 4.6KJalview annotation file for alignment
[ ]jp_83rYVHz.jnet2015-04-17 17:35 6.8KJnet secondary structure output
[TXT]jp_83rYVHz.profile2015-04-17 17:30 30KPSIBLAST profile from alignment
[ ]jp_83rYVHz.pssm2015-04-17 17:35 40KPSIBLAST PSSM for Jnet
[TXT]jp_83rYVHz.results.html2016-02-15 12:17 83KJPred results page
[TXT]jp_83rYVHz.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_83rYVHz.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_83rYVHz.seq2015-04-17 16:40 199 Sequence data file
[TXT]jp_83rYVHz.simple.html2015-04-17 17:35 1.4KBrief HTML: sequence and prediction only
[TXT]jp_83rYVHz.svg.html2015-04-17 17:37 75KJalview SVG summary of results
[ ]jp_83rYVHz.tar.gz2015-04-17 17:37 25MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.