JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:32 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nu9c1.name2015-04-17 17:53 0 Job name flag file
[ ]jp_RS6bZcn.align2015-04-17 19:32 2.7KPSIBLAST alignment in FASTA format
[TXT]jp_RS6bZcn.als2015-04-17 19:32 1.9KAlscript command file for PS/PDF output
[ ]jp_RS6bZcn.blast.gz2015-04-17 19:32 5.7KCompressed PSIBLAST output file
[TXT]jp_RS6bZcn.coils.csv2015-04-17 19:32 900 COILS output in CSV format
[ ]jp_RS6bZcn.coilseq.lupas_142015-04-17 19:32 6.1KCOILS output, window length 14
[ ]jp_RS6bZcn.coilseq.lupas_212015-04-17 19:32 6.1KCOILS output, window length 21
[ ]jp_RS6bZcn.coilseq.lupas_282015-04-17 19:32 6.1KCOILS output, window length 28
[ ]jp_RS6bZcn.concise2015-04-17 19:32 11KPrediction: coiled-coil, solvent, alignment
[ ]jp_RS6bZcn.concise.blc2015-04-17 19:32 4.9KBLC format prediction and alignment data
[ ]jp_RS6bZcn.concise.fasta2015-04-17 19:32 4.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_RS6bZcn.concise.pdf2015-04-17 19:32 30KPDF prediction and alignment data
[ ]jp_RS6bZcn.concise.ps2015-04-17 19:32 563KPrediction: coiled-coil, solvent, alignment
[ ]jp_RS6bZcn.fasta2015-04-17 19:24 160 Input query sequence in FASTA format
[ ]jp_RS6bZcn.full_MSA.fasta2015-04-17 19:32 6.5KFull MSA before JPred filters in FASTA
[TXT]jp_RS6bZcn.full_MSA.fasta.noGaps.html2015-04-17 19:32 11KFull MSA before JPred filters in FASTA
[TXT]jp_RS6bZcn.full_MSA.fasta.withGaps.html2015-04-17 19:32 13KFull MSA before JPred filters in FASTA
[ ]jp_RS6bZcn.hmm2015-04-17 19:32 27KHHMer2 profile of the alignment
[TXT]jp_RS6bZcn.html2015-04-17 19:32 21KHTML prediction and alignment data
[ ]jp_RS6bZcn.input2015-04-17 17:53 152 Raw input data for analysis
[ ]jp_RS6bZcn.jalview2015-04-17 19:32 3.8KJalview annotation file for alignment
[ ]jp_RS6bZcn.jnet2015-04-17 19:32 5.4KJnet secondary structure output
[TXT]jp_RS6bZcn.profile2015-04-17 19:30 23KPSIBLAST profile from alignment
[ ]jp_RS6bZcn.pssm2015-04-17 19:32 31KPSIBLAST PSSM for Jnet
[TXT]jp_RS6bZcn.results.html2016-02-15 12:17 65KJPred results page
[TXT]jp_RS6bZcn.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_RS6bZcn.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_RS6bZcn.seq2015-04-17 17:53 160 Sequence data file
[TXT]jp_RS6bZcn.simple.html2015-04-17 19:32 1.3KBrief HTML: sequence and prediction only
[TXT]jp_RS6bZcn.svg.html2015-04-17 19:32 57KJalview SVG summary of results
[ ]jp_RS6bZcn.tar.gz2015-04-17 19:32 71KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.