JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:12 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1o98a1.name2015-04-17 15:25 0 Job name flag file
[ ]jp_1T4hTvm.align2015-04-17 16:11 211KPSIBLAST alignment in FASTA format
[TXT]jp_1T4hTvm.als2015-04-17 16:11 3.4KAlscript command file for PS/PDF output
[ ]jp_1T4hTvm.blast.gz2015-04-17 16:10 1.9MCompressed PSIBLAST output file
[TXT]jp_1T4hTvm.coils.csv2015-04-17 16:11 1.4KCOILS output in CSV format
[ ]jp_1T4hTvm.coilseq.lupas_142015-04-17 16:11 9.8KCOILS output, window length 14
[ ]jp_1T4hTvm.coilseq.lupas_212015-04-17 16:11 9.8KCOILS output, window length 21
[ ]jp_1T4hTvm.coilseq.lupas_282015-04-17 16:11 9.8KCOILS output, window length 28
[ ]jp_1T4hTvm.concise2015-04-17 16:11 418KPrediction: coiled-coil, solvent, alignment
[ ]jp_1T4hTvm.concise.blc2015-04-17 16:11 211KBLC format prediction and alignment data
[ ]jp_1T4hTvm.concise.fasta2015-04-17 16:11 213KPrediction: coiled-coil, solvent, alignment
[ ]jp_1T4hTvm.concise.pdf2015-04-17 16:12 1.4MPDF prediction and alignment data
[ ]jp_1T4hTvm.concise.ps2015-04-17 16:11 26MPrediction: coiled-coil, solvent, alignment
[ ]jp_1T4hTvm.fasta2015-04-17 15:25 250 Input query sequence in FASTA format
[ ]jp_1T4hTvm.full_MSA.fasta2015-04-17 16:10 2.8MFull MSA before JPred filters in FASTA
[TXT]jp_1T4hTvm.full_MSA.fasta.noGaps.html2015-04-17 16:12 837KFull MSA before JPred filters in FASTA
[TXT]jp_1T4hTvm.full_MSA.fasta.withGaps.html2015-04-17 16:12 11MFull MSA before JPred filters in FASTA
[ ]jp_1T4hTvm.hmm2015-04-17 16:11 44KHHMer2 profile of the alignment
[TXT]jp_1T4hTvm.html2015-04-17 16:11 395KHTML prediction and alignment data
[ ]jp_1T4hTvm.input2015-04-17 15:25 241 Raw input data for analysis
[ ]jp_1T4hTvm.jalview2015-04-17 16:11 5.5KJalview annotation file for alignment
[ ]jp_1T4hTvm.jnet2015-04-17 16:11 8.6KJnet secondary structure output
[TXT]jp_1T4hTvm.profile2015-04-17 15:55 38KPSIBLAST profile from alignment
[ ]jp_1T4hTvm.pssm2015-04-17 16:11 50KPSIBLAST PSSM for Jnet
[TXT]jp_1T4hTvm.results.html2016-02-15 12:17 102KJPred results page
[TXT]jp_1T4hTvm.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_1T4hTvm.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_1T4hTvm.seq2015-04-17 15:25 250 Sequence data file
[TXT]jp_1T4hTvm.simple.html2015-04-17 16:11 1.7KBrief HTML: sequence and prediction only
[TXT]jp_1T4hTvm.svg.html2015-04-17 16:12 94KJalview SVG summary of results
[ ]jp_1T4hTvm.tar.gz2015-04-17 16:12 4.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.