JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:38 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1oaca4.name2015-04-17 16:06 0 Job name flag file
[ ]jp_IY8vjmx.align2015-04-17 16:37 89KPSIBLAST alignment in FASTA format
[TXT]jp_IY8vjmx.als2015-04-17 16:37 2.7KAlscript command file for PS/PDF output
[ ]jp_IY8vjmx.blast.gz2015-04-17 16:37 1.5MCompressed PSIBLAST output file
[TXT]jp_IY8vjmx.coils.csv2015-04-17 16:37 546 COILS output in CSV format
[ ]jp_IY8vjmx.coilseq.lupas_142015-04-17 16:37 3.6KCOILS output, window length 14
[ ]jp_IY8vjmx.coilseq.lupas_212015-04-17 16:37 3.6KCOILS output, window length 21
[ ]jp_IY8vjmx.coilseq.lupas_282015-04-17 16:37 3.6KCOILS output, window length 28
[ ]jp_IY8vjmx.concise2015-04-17 16:37 169KPrediction: coiled-coil, solvent, alignment
[ ]jp_IY8vjmx.concise.blc2015-04-17 16:37 88KBLC format prediction and alignment data
[ ]jp_IY8vjmx.concise.fasta2015-04-17 16:37 90KPrediction: coiled-coil, solvent, alignment
[ ]jp_IY8vjmx.concise.pdf2015-04-17 16:37 576KPDF prediction and alignment data
[ ]jp_IY8vjmx.concise.ps2015-04-17 16:37 9.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_IY8vjmx.fasta2015-04-17 16:29 100 Input query sequence in FASTA format
[ ]jp_IY8vjmx.full_MSA.fasta2015-04-17 16:37 4.5MFull MSA before JPred filters in FASTA
[TXT]jp_IY8vjmx.full_MSA.fasta.noGaps.html2015-04-17 16:38 960KFull MSA before JPred filters in FASTA
[TXT]jp_IY8vjmx.full_MSA.fasta.withGaps.html2015-04-17 16:38 13MFull MSA before JPred filters in FASTA
[ ]jp_IY8vjmx.hmm2015-04-17 16:37 16KHHMer2 profile of the alignment
[TXT]jp_IY8vjmx.html2015-04-17 16:37 260KHTML prediction and alignment data
[ ]jp_IY8vjmx.input2015-04-17 16:06 93 Raw input data for analysis
[ ]jp_IY8vjmx.jalview2015-04-17 16:37 2.6KJalview annotation file for alignment
[ ]jp_IY8vjmx.jnet2015-04-17 16:37 3.2KJnet secondary structure output
[TXT]jp_IY8vjmx.profile2015-04-17 16:35 14KPSIBLAST profile from alignment
[ ]jp_IY8vjmx.pssm2015-04-17 16:37 18KPSIBLAST PSSM for Jnet
[TXT]jp_IY8vjmx.results.html2016-02-15 12:17 46KJPred results page
[TXT]jp_IY8vjmx.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_IY8vjmx.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_IY8vjmx.seq2015-04-17 16:06 100 Sequence data file
[TXT]jp_IY8vjmx.simple.html2015-04-17 16:37 1.3KBrief HTML: sequence and prediction only
[TXT]jp_IY8vjmx.svg.html2015-04-17 16:38 38KJalview SVG summary of results
[ ]jp_IY8vjmx.tar.gz2015-04-17 16:38 3.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.