JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:28 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1oaia_.name2015-04-17 15:26 0 Job name flag file
[ ]jp_VWan8BV.align2015-04-17 15:28 24KPSIBLAST alignment in FASTA format
[TXT]jp_VWan8BV.als2015-04-17 15:28 1.8KAlscript command file for PS/PDF output
[ ]jp_VWan8BV.blast.gz2015-04-17 15:28 94KCompressed PSIBLAST output file
[TXT]jp_VWan8BV.coils.csv2015-04-17 15:28 384 COILS output in CSV format
[ ]jp_VWan8BV.coilseq.lupas_142015-04-17 15:28 2.5KCOILS output, window length 14
[ ]jp_VWan8BV.coilseq.lupas_212015-04-17 15:28 2.5KCOILS output, window length 21
[ ]jp_VWan8BV.coilseq.lupas_282015-04-17 15:28 2.5KCOILS output, window length 28
[ ]jp_VWan8BV.concise2015-04-17 15:28 47KPrediction: coiled-coil, solvent, alignment
[ ]jp_VWan8BV.concise.blc2015-04-17 15:28 25KBLC format prediction and alignment data
[ ]jp_VWan8BV.concise.fasta2015-04-17 15:28 25KPrediction: coiled-coil, solvent, alignment
[ ]jp_VWan8BV.concise.pdf2015-04-17 15:28 137KPDF prediction and alignment data
[ ]jp_VWan8BV.concise.ps2015-04-17 15:28 2.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_VWan8BV.fasta2015-04-17 15:26 72 Input query sequence in FASTA format
[ ]jp_VWan8BV.full_MSA.fasta2015-04-17 15:28 105KFull MSA before JPred filters in FASTA
[TXT]jp_VWan8BV.full_MSA.fasta.noGaps.html2015-04-17 15:28 102KFull MSA before JPred filters in FASTA
[TXT]jp_VWan8BV.full_MSA.fasta.withGaps.html2015-04-17 15:28 454KFull MSA before JPred filters in FASTA
[ ]jp_VWan8BV.hmm2015-04-17 15:28 11KHHMer2 profile of the alignment
[TXT]jp_VWan8BV.html2015-04-17 15:28 92KHTML prediction and alignment data
[ ]jp_VWan8BV.input2015-04-17 15:26 66 Raw input data for analysis
[ ]jp_VWan8BV.jalview2015-04-17 15:28 2.0KJalview annotation file for alignment
[ ]jp_VWan8BV.jnet2015-04-17 15:28 2.2KJnet secondary structure output
[TXT]jp_VWan8BV.profile2015-04-17 15:27 9.8KPSIBLAST profile from alignment
[ ]jp_VWan8BV.pssm2015-04-17 15:28 13KPSIBLAST PSSM for Jnet
[TXT]jp_VWan8BV.results.html2016-02-15 12:17 35KJPred results page
[TXT]jp_VWan8BV.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_VWan8BV.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_VWan8BV.seq2015-04-17 15:26 72 Sequence data file
[TXT]jp_VWan8BV.simple.html2015-04-17 15:28 1.1KBrief HTML: sequence and prediction only
[TXT]jp_VWan8BV.svg.html2015-04-17 15:28 27KJalview SVG summary of results
[ ]jp_VWan8BV.tar.gz2015-04-17 15:28 338KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.