JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:33 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1ofda1.name2015-04-17 19:07 0 Job name flag file
[ ]jp_EXO0s__.align2015-04-17 21:32 206KPSIBLAST alignment in FASTA format
[TXT]jp_EXO0s__.als2015-04-17 21:32 4.4KAlscript command file for PS/PDF output
[ ]jp_EXO0s__.blast.gz2015-04-17 21:31 4.0MCompressed PSIBLAST output file
[TXT]jp_EXO0s__.coils.csv2015-04-17 21:32 1.6KCOILS output in CSV format
[ ]jp_EXO0s__.coilseq.lupas_142015-04-17 21:32 11KCOILS output, window length 14
[ ]jp_EXO0s__.coilseq.lupas_212015-04-17 21:32 11KCOILS output, window length 21
[ ]jp_EXO0s__.coilseq.lupas_282015-04-17 21:32 11KCOILS output, window length 28
[ ]jp_EXO0s__.concise2015-04-17 21:32 410KPrediction: coiled-coil, solvent, alignment
[ ]jp_EXO0s__.concise.blc2015-04-17 21:32 207KBLC format prediction and alignment data
[ ]jp_EXO0s__.concise.fasta2015-04-17 21:32 209KPrediction: coiled-coil, solvent, alignment
[ ]jp_EXO0s__.concise.pdf2015-04-17 21:32 1.3MPDF prediction and alignment data
[ ]jp_EXO0s__.concise.ps2015-04-17 21:32 25MPrediction: coiled-coil, solvent, alignment
[ ]jp_EXO0s__.fasta2015-04-17 21:27 284 Input query sequence in FASTA format
[ ]jp_EXO0s__.full_MSA.fasta2015-04-17 21:31 7.1MFull MSA before JPred filters in FASTA
[TXT]jp_EXO0s__.full_MSA.fasta.noGaps.html2015-04-17 21:32 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_EXO0s__.full_MSA.fasta.withGaps.html2015-04-17 21:32 24MFull MSA before JPred filters in FASTA
[ ]jp_EXO0s__.hmm2015-04-17 21:32 50KHHMer2 profile of the alignment
[TXT]jp_EXO0s__.html2015-04-17 21:32 370KHTML prediction and alignment data
[ ]jp_EXO0s__.input2015-04-17 19:07 275 Raw input data for analysis
[ ]jp_EXO0s__.jalview2015-04-17 21:32 6.2KJalview annotation file for alignment
[ ]jp_EXO0s__.jnet2015-04-17 21:32 9.8KJnet secondary structure output
[TXT]jp_EXO0s__.profile2015-04-17 21:30 43KPSIBLAST profile from alignment
[ ]jp_EXO0s__.pssm2015-04-17 21:32 58KPSIBLAST PSSM for Jnet
[TXT]jp_EXO0s__.results.html2016-02-15 12:17 117KJPred results page
[TXT]jp_EXO0s__.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_EXO0s__.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_EXO0s__.seq2015-04-17 19:07 284 Sequence data file
[TXT]jp_EXO0s__.simple.html2015-04-17 21:32 2.0KBrief HTML: sequence and prediction only
[TXT]jp_EXO0s__.svg.html2015-04-17 21:32 109KJalview SVG summary of results
[ ]jp_EXO0s__.tar.gz2015-04-17 21:33 7.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.