JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:31 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1oisa_.name2015-04-17 17:17 0 Job name flag file
[ ]jp_X77TRMm.align2015-04-17 18:30 63KPSIBLAST alignment in FASTA format
[TXT]jp_X77TRMm.als2015-04-17 18:31 3.1KAlscript command file for PS/PDF output
[ ]jp_X77TRMm.blast.gz2015-04-17 18:30 462KCompressed PSIBLAST output file
[TXT]jp_X77TRMm.coils.csv2015-04-17 18:30 1.3KCOILS output in CSV format
[ ]jp_X77TRMm.coilseq.lupas_142015-04-17 18:30 9.2KCOILS output, window length 14
[ ]jp_X77TRMm.coilseq.lupas_212015-04-17 18:30 9.2KCOILS output, window length 21
[ ]jp_X77TRMm.coilseq.lupas_282015-04-17 18:30 9.2KCOILS output, window length 28
[ ]jp_X77TRMm.concise2015-04-17 18:30 131KPrediction: coiled-coil, solvent, alignment
[ ]jp_X77TRMm.concise.blc2015-04-17 18:31 65KBLC format prediction and alignment data
[ ]jp_X77TRMm.concise.fasta2015-04-17 18:31 65KPrediction: coiled-coil, solvent, alignment
[ ]jp_X77TRMm.concise.pdf2015-04-17 18:31 419KPDF prediction and alignment data
[ ]jp_X77TRMm.concise.ps2015-04-17 18:31 7.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_X77TRMm.fasta2015-04-17 18:24 236 Input query sequence in FASTA format
[ ]jp_X77TRMm.full_MSA.fasta2015-04-17 18:30 568KFull MSA before JPred filters in FASTA
[TXT]jp_X77TRMm.full_MSA.fasta.noGaps.html2015-04-17 18:31 217KFull MSA before JPred filters in FASTA
[TXT]jp_X77TRMm.full_MSA.fasta.withGaps.html2015-04-17 18:31 2.0MFull MSA before JPred filters in FASTA
[ ]jp_X77TRMm.hmm2015-04-17 18:30 41KHHMer2 profile of the alignment
[TXT]jp_X77TRMm.html2015-04-17 18:30 132KHTML prediction and alignment data
[ ]jp_X77TRMm.input2015-04-17 17:17 227 Raw input data for analysis
[ ]jp_X77TRMm.jalview2015-04-17 18:31 5.2KJalview annotation file for alignment
[ ]jp_X77TRMm.jnet2015-04-17 18:30 8.1KJnet secondary structure output
[TXT]jp_X77TRMm.profile2015-04-17 18:27 35KPSIBLAST profile from alignment
[ ]jp_X77TRMm.pssm2015-04-17 18:30 47KPSIBLAST PSSM for Jnet
[TXT]jp_X77TRMm.results.html2016-02-15 12:17 95KJPred results page
[TXT]jp_X77TRMm.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_X77TRMm.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_X77TRMm.seq2015-04-17 17:17 236 Sequence data file
[TXT]jp_X77TRMm.simple.html2015-04-17 18:30 1.6KBrief HTML: sequence and prediction only
[TXT]jp_X77TRMm.svg.html2015-04-17 18:31 87KJalview SVG summary of results
[ ]jp_X77TRMm.tar.gz2015-04-17 18:31 1.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.