JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:56 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ou8a_.name2015-04-17 15:26 0 Job name flag file
[ ]jp_vAKshzF.align2015-04-17 15:56 41KPSIBLAST alignment in FASTA format
[TXT]jp_vAKshzF.als2015-04-17 15:56 2.6KAlscript command file for PS/PDF output
[ ]jp_vAKshzF.blast.gz2015-04-17 15:56 173KCompressed PSIBLAST output file
[TXT]jp_vAKshzF.coils.csv2015-04-17 15:56 666 COILS output in CSV format
[ ]jp_vAKshzF.coilseq.lupas_142015-04-17 15:56 4.5KCOILS output, window length 14
[ ]jp_vAKshzF.coilseq.lupas_212015-04-17 15:56 4.5KCOILS output, window length 21
[ ]jp_vAKshzF.coilseq.lupas_282015-04-17 15:56 4.5KCOILS output, window length 28
[ ]jp_vAKshzF.concise2015-04-17 15:56 82KPrediction: coiled-coil, solvent, alignment
[ ]jp_vAKshzF.concise.blc2015-04-17 15:56 42KBLC format prediction and alignment data
[ ]jp_vAKshzF.concise.fasta2015-04-17 15:56 42KPrediction: coiled-coil, solvent, alignment
[ ]jp_vAKshzF.concise.pdf2015-04-17 15:56 268KPDF prediction and alignment data
[ ]jp_vAKshzF.concise.ps2015-04-17 15:56 4.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_vAKshzF.fasta2015-04-17 15:26 120 Input query sequence in FASTA format
[ ]jp_vAKshzF.full_MSA.fasta2015-04-17 15:56 173KFull MSA before JPred filters in FASTA
[TXT]jp_vAKshzF.full_MSA.fasta.noGaps.html2015-04-17 15:56 187KFull MSA before JPred filters in FASTA
[TXT]jp_vAKshzF.full_MSA.fasta.withGaps.html2015-04-17 15:56 822KFull MSA before JPred filters in FASTA
[ ]jp_vAKshzF.hmm2015-04-17 15:56 20KHHMer2 profile of the alignment
[TXT]jp_vAKshzF.html2015-04-17 15:56 116KHTML prediction and alignment data
[ ]jp_vAKshzF.input2015-04-17 15:26 113 Raw input data for analysis
[ ]jp_vAKshzF.jalview2015-04-17 15:56 2.9KJalview annotation file for alignment
[ ]jp_vAKshzF.jnet2015-04-17 15:56 3.9KJnet secondary structure output
[TXT]jp_vAKshzF.profile2015-04-17 15:47 17KPSIBLAST profile from alignment
[ ]jp_vAKshzF.pssm2015-04-17 15:56 23KPSIBLAST PSSM for Jnet
[TXT]jp_vAKshzF.results.html2016-02-15 12:18 53KJPred results page
[TXT]jp_vAKshzF.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_vAKshzF.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_vAKshzF.seq2015-04-17 15:26 120 Sequence data file
[TXT]jp_vAKshzF.simple.html2015-04-17 15:56 1.4KBrief HTML: sequence and prediction only
[TXT]jp_vAKshzF.svg.html2015-04-17 15:56 45KJalview SVG summary of results
[ ]jp_vAKshzF.tar.gz2015-04-17 15:56 619KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.