JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:29 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ow1a_.name2015-04-17 17:53 0 Job name flag file
[ ]jp_KePDbm4.align2015-04-17 19:29 22KPSIBLAST alignment in FASTA format
[TXT]jp_KePDbm4.als2015-04-17 19:29 3.0KAlscript command file for PS/PDF output
[ ]jp_KePDbm4.blast.gz2015-04-17 19:29 223KCompressed PSIBLAST output file
[TXT]jp_KePDbm4.coils.csv2015-04-17 19:29 1.0KCOILS output in CSV format
[ ]jp_KePDbm4.coilseq.lupas_142015-04-17 19:29 7.0KCOILS output, window length 14
[ ]jp_KePDbm4.coilseq.lupas_212015-04-17 19:29 7.0KCOILS output, window length 21
[ ]jp_KePDbm4.coilseq.lupas_282015-04-17 19:29 7.0KCOILS output, window length 28
[ ]jp_KePDbm4.concise2015-04-17 19:29 49KPrediction: coiled-coil, solvent, alignment
[ ]jp_KePDbm4.concise.blc2015-04-17 19:29 24KBLC format prediction and alignment data
[ ]jp_KePDbm4.concise.fasta2015-04-17 19:29 24KPrediction: coiled-coil, solvent, alignment
[ ]jp_KePDbm4.concise.pdf2015-04-17 19:29 169KPDF prediction and alignment data
[ ]jp_KePDbm4.concise.ps2015-04-17 19:29 2.9MPrediction: coiled-coil, solvent, alignment
[ ]jp_KePDbm4.fasta2015-04-17 19:25 182 Input query sequence in FASTA format
[ ]jp_KePDbm4.full_MSA.fasta2015-04-17 19:29 309KFull MSA before JPred filters in FASTA
[TXT]jp_KePDbm4.full_MSA.fasta.noGaps.html2015-04-17 19:29 111KFull MSA before JPred filters in FASTA
[TXT]jp_KePDbm4.full_MSA.fasta.withGaps.html2015-04-17 19:29 1.1MFull MSA before JPred filters in FASTA
[ ]jp_KePDbm4.hmm2015-04-17 19:29 31KHHMer2 profile of the alignment
[TXT]jp_KePDbm4.html2015-04-17 19:29 63KHTML prediction and alignment data
[ ]jp_KePDbm4.input2015-04-17 17:53 174 Raw input data for analysis
[ ]jp_KePDbm4.jalview2015-04-17 19:29 4.2KJalview annotation file for alignment
[ ]jp_KePDbm4.jnet2015-04-17 19:29 6.1KJnet secondary structure output
[TXT]jp_KePDbm4.profile2015-04-17 19:27 27KPSIBLAST profile from alignment
[ ]jp_KePDbm4.pssm2015-04-17 19:29 36KPSIBLAST PSSM for Jnet
[TXT]jp_KePDbm4.results.html2016-02-15 12:18 77KJPred results page
[TXT]jp_KePDbm4.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_KePDbm4.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_KePDbm4.seq2015-04-17 17:53 182 Sequence data file
[TXT]jp_KePDbm4.simple.html2015-04-17 19:29 1.5KBrief HTML: sequence and prediction only
[TXT]jp_KePDbm4.svg.html2015-04-17 19:29 69KJalview SVG summary of results
[ ]jp_KePDbm4.tar.gz2015-04-17 19:29 543KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.