JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:34 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1oxxk1.name2015-04-17 15:26 0 Job name flag file
[ ]jp_PS5DqMR.align2015-04-17 15:33 127KPSIBLAST alignment in FASTA format
[TXT]jp_PS5DqMR.als2015-04-17 15:33 2.8KAlscript command file for PS/PDF output
[ ]jp_PS5DqMR.blast.gz2015-04-17 15:32 2.8MCompressed PSIBLAST output file
[TXT]jp_PS5DqMR.coils.csv2015-04-17 15:33 690 COILS output in CSV format
[ ]jp_PS5DqMR.coilseq.lupas_142015-04-17 15:33 4.6KCOILS output, window length 14
[ ]jp_PS5DqMR.coilseq.lupas_212015-04-17 15:33 4.6KCOILS output, window length 21
[ ]jp_PS5DqMR.coilseq.lupas_282015-04-17 15:33 4.6KCOILS output, window length 28
[ ]jp_PS5DqMR.concise2015-04-17 15:33 244KPrediction: coiled-coil, solvent, alignment
[ ]jp_PS5DqMR.concise.blc2015-04-17 15:33 126KBLC format prediction and alignment data
[ ]jp_PS5DqMR.concise.fasta2015-04-17 15:33 128KPrediction: coiled-coil, solvent, alignment
[ ]jp_PS5DqMR.concise.pdf2015-04-17 15:33 898KPDF prediction and alignment data
[ ]jp_PS5DqMR.concise.ps2015-04-17 15:33 15MPrediction: coiled-coil, solvent, alignment
[ ]jp_PS5DqMR.fasta2015-04-17 15:26 124 Input query sequence in FASTA format
[ ]jp_PS5DqMR.full_MSA.fasta2015-04-17 15:32 14MFull MSA before JPred filters in FASTA
[TXT]jp_PS5DqMR.full_MSA.fasta.noGaps.html2015-04-17 15:34 1.9MFull MSA before JPred filters in FASTA
[TXT]jp_PS5DqMR.full_MSA.fasta.withGaps.html2015-04-17 15:34 35MFull MSA before JPred filters in FASTA
[ ]jp_PS5DqMR.hmm2015-04-17 15:33 21KHHMer2 profile of the alignment
[TXT]jp_PS5DqMR.html2015-04-17 15:33 328KHTML prediction and alignment data
[ ]jp_PS5DqMR.input2015-04-17 15:26 117 Raw input data for analysis
[ ]jp_PS5DqMR.jalview2015-04-17 15:33 3.0KJalview annotation file for alignment
[ ]jp_PS5DqMR.jnet2015-04-17 15:33 4.1KJnet secondary structure output
[TXT]jp_PS5DqMR.profile2015-04-17 15:28 18KPSIBLAST profile from alignment
[ ]jp_PS5DqMR.pssm2015-04-17 15:33 24KPSIBLAST PSSM for Jnet
[TXT]jp_PS5DqMR.results.html2016-02-15 12:18 54KJPred results page
[TXT]jp_PS5DqMR.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_PS5DqMR.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_PS5DqMR.seq2015-04-17 15:26 124 Sequence data file
[TXT]jp_PS5DqMR.simple.html2015-04-17 15:33 1.3KBrief HTML: sequence and prediction only
[TXT]jp_PS5DqMR.svg.html2015-04-17 15:34 45KJalview SVG summary of results
[ ]jp_PS5DqMR.tar.gz2015-04-17 15:34 7.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.