JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:34 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1p1xa_.name2015-04-17 17:54 0 Job name flag file
[ ]jp_kctcdGG.align2015-04-17 19:33 210KPSIBLAST alignment in FASTA format
[TXT]jp_kctcdGG.als2015-04-17 19:33 3.7KAlscript command file for PS/PDF output
[ ]jp_kctcdGG.blast.gz2015-04-17 19:31 3.1MCompressed PSIBLAST output file
[TXT]jp_kctcdGG.coils.csv2015-04-17 19:33 1.5KCOILS output in CSV format
[ ]jp_kctcdGG.coilseq.lupas_142015-04-17 19:33 10KCOILS output, window length 14
[ ]jp_kctcdGG.coilseq.lupas_212015-04-17 19:33 10KCOILS output, window length 21
[ ]jp_kctcdGG.coilseq.lupas_282015-04-17 19:33 10KCOILS output, window length 28
[ ]jp_kctcdGG.concise2015-04-17 19:33 416KPrediction: coiled-coil, solvent, alignment
[ ]jp_kctcdGG.concise.blc2015-04-17 19:33 210KBLC format prediction and alignment data
[ ]jp_kctcdGG.concise.fasta2015-04-17 19:33 212KPrediction: coiled-coil, solvent, alignment
[ ]jp_kctcdGG.concise.pdf2015-04-17 19:33 1.4MPDF prediction and alignment data
[ ]jp_kctcdGG.concise.ps2015-04-17 19:33 26MPrediction: coiled-coil, solvent, alignment
[ ]jp_kctcdGG.fasta2015-04-17 19:25 266 Input query sequence in FASTA format
[ ]jp_kctcdGG.full_MSA.fasta2015-04-17 19:32 5.3MFull MSA before JPred filters in FASTA
[TXT]jp_kctcdGG.full_MSA.fasta.noGaps.html2015-04-17 19:33 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_kctcdGG.full_MSA.fasta.withGaps.html2015-04-17 19:33 20MFull MSA before JPred filters in FASTA
[ ]jp_kctcdGG.hmm2015-04-17 19:33 47KHHMer2 profile of the alignment
[TXT]jp_kctcdGG.html2015-04-17 19:33 386KHTML prediction and alignment data
[ ]jp_kctcdGG.input2015-04-17 17:54 257 Raw input data for analysis
[ ]jp_kctcdGG.jalview2015-04-17 19:33 5.9KJalview annotation file for alignment
[ ]jp_kctcdGG.jnet2015-04-17 19:33 9.1KJnet secondary structure output
[TXT]jp_kctcdGG.profile2015-04-17 19:30 40KPSIBLAST profile from alignment
[ ]jp_kctcdGG.pssm2015-04-17 19:33 54KPSIBLAST PSSM for Jnet
[TXT]jp_kctcdGG.results.html2016-02-15 12:18 109KJPred results page
[TXT]jp_kctcdGG.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_kctcdGG.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_kctcdGG.seq2015-04-17 17:54 266 Sequence data file
[TXT]jp_kctcdGG.simple.html2015-04-17 19:33 1.8KBrief HTML: sequence and prediction only
[TXT]jp_kctcdGG.svg.html2015-04-17 19:34 101KJalview SVG summary of results
[ ]jp_kctcdGG.tar.gz2015-04-17 19:34 6.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.