JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:38 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1p5dx1.name2015-04-17 17:54 0 Job name flag file
[ ]jp_qZwIoei.align2015-04-17 19:37 135KPSIBLAST alignment in FASTA format
[TXT]jp_qZwIoei.als2015-04-17 19:37 2.7KAlscript command file for PS/PDF output
[ ]jp_qZwIoei.blast.gz2015-04-17 19:36 7.9MCompressed PSIBLAST output file
[TXT]jp_qZwIoei.coils.csv2015-04-17 19:37 906 COILS output in CSV format
[ ]jp_qZwIoei.coilseq.lupas_142015-04-17 19:37 6.1KCOILS output, window length 14
[ ]jp_qZwIoei.coilseq.lupas_212015-04-17 19:37 6.1KCOILS output, window length 21
[ ]jp_qZwIoei.coilseq.lupas_282015-04-17 19:37 6.1KCOILS output, window length 28
[ ]jp_qZwIoei.concise2015-04-17 19:37 264KPrediction: coiled-coil, solvent, alignment
[ ]jp_qZwIoei.concise.blc2015-04-17 19:37 135KBLC format prediction and alignment data
[ ]jp_qZwIoei.concise.fasta2015-04-17 19:37 137KPrediction: coiled-coil, solvent, alignment
[ ]jp_qZwIoei.concise.pdf2015-04-17 19:38 913KPDF prediction and alignment data
[ ]jp_qZwIoei.concise.ps2015-04-17 19:37 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_qZwIoei.fasta2015-04-17 19:26 161 Input query sequence in FASTA format
[ ]jp_qZwIoei.full_MSA.fasta2015-04-17 19:37 17MFull MSA before JPred filters in FASTA
[TXT]jp_qZwIoei.full_MSA.fasta.noGaps.html2015-04-17 19:38 2.7MFull MSA before JPred filters in FASTA
[TXT]jp_qZwIoei.full_MSA.fasta.withGaps.html2015-04-17 19:38 51MFull MSA before JPred filters in FASTA
[ ]jp_qZwIoei.hmm2015-04-17 19:37 27KHHMer2 profile of the alignment
[TXT]jp_qZwIoei.html2015-04-17 19:37 310KHTML prediction and alignment data
[ ]jp_qZwIoei.input2015-04-17 17:54 153 Raw input data for analysis
[ ]jp_qZwIoei.jalview2015-04-17 19:37 3.8KJalview annotation file for alignment
[ ]jp_qZwIoei.jnet2015-04-17 19:37 5.4KJnet secondary structure output
[TXT]jp_qZwIoei.profile2015-04-17 19:33 24KPSIBLAST profile from alignment
[ ]jp_qZwIoei.pssm2015-04-17 19:37 31KPSIBLAST PSSM for Jnet
[TXT]jp_qZwIoei.results.html2016-02-15 12:18 68KJPred results page
[TXT]jp_qZwIoei.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_qZwIoei.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_qZwIoei.seq2015-04-17 17:54 161 Sequence data file
[TXT]jp_qZwIoei.simple.html2015-04-17 19:37 1.4KBrief HTML: sequence and prediction only
[TXT]jp_qZwIoei.svg.html2015-04-17 19:38 60KJalview SVG summary of results
[ ]jp_qZwIoei.tar.gz2015-04-17 19:38 14MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.