JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:42 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1p9ga_.name2015-04-17 15:27 0 Job name flag file
[ ]jp_QDMSDAC.align2015-04-17 15:42 7.0KPSIBLAST alignment in FASTA format
[TXT]jp_QDMSDAC.als2015-04-17 15:42 1.1KAlscript command file for PS/PDF output
[ ]jp_QDMSDAC.blast.gz2015-04-17 15:42 12KCompressed PSIBLAST output file
[TXT]jp_QDMSDAC.coils.csv2015-04-17 15:42 276 COILS output in CSV format
[ ]jp_QDMSDAC.coilseq.lupas_142015-04-17 15:42 1.7KCOILS output, window length 14
[ ]jp_QDMSDAC.coilseq.lupas_212015-04-17 15:42 1.7KCOILS output, window length 21
[ ]jp_QDMSDAC.coilseq.lupas_282015-04-17 15:42 1.7KCOILS output, window length 28
[ ]jp_QDMSDAC.concise2015-04-17 15:42 14KPrediction: coiled-coil, solvent, alignment
[ ]jp_QDMSDAC.concise.blc2015-04-17 15:42 7.5KBLC format prediction and alignment data
[ ]jp_QDMSDAC.concise.fasta2015-04-17 15:42 7.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_QDMSDAC.concise.pdf2015-04-17 15:42 32KPDF prediction and alignment data
[ ]jp_QDMSDAC.concise.ps2015-04-17 15:42 653KPrediction: coiled-coil, solvent, alignment
[ ]jp_QDMSDAC.fasta2015-04-17 15:27 54 Input query sequence in FASTA format
[ ]jp_QDMSDAC.full_MSA.fasta2015-04-17 15:42 23KFull MSA before JPred filters in FASTA
[TXT]jp_QDMSDAC.full_MSA.fasta.noGaps.html2015-04-17 15:42 36KFull MSA before JPred filters in FASTA
[TXT]jp_QDMSDAC.full_MSA.fasta.withGaps.html2015-04-17 15:42 140KFull MSA before JPred filters in FASTA
[ ]jp_QDMSDAC.hmm2015-04-17 15:42 7.7KHHMer2 profile of the alignment
[TXT]jp_QDMSDAC.html2015-04-17 15:42 34KHTML prediction and alignment data
[ ]jp_QDMSDAC.input2015-04-17 15:27 48 Raw input data for analysis
[ ]jp_QDMSDAC.jalview2015-04-17 15:42 1.6KJalview annotation file for alignment
[ ]jp_QDMSDAC.jnet2015-04-17 15:42 1.6KJnet secondary structure output
[TXT]jp_QDMSDAC.profile2015-04-17 15:41 7.0KPSIBLAST profile from alignment
[ ]jp_QDMSDAC.pssm2015-04-17 15:42 8.8KPSIBLAST PSSM for Jnet
[TXT]jp_QDMSDAC.results.html2016-02-15 12:18 25KJPred results page
[TXT]jp_QDMSDAC.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_QDMSDAC.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_QDMSDAC.seq2015-04-17 15:27 54 Sequence data file
[TXT]jp_QDMSDAC.simple.html2015-04-17 15:42 934 Brief HTML: sequence and prediction only
[TXT]jp_QDMSDAC.svg.html2015-04-17 15:42 17KJalview SVG summary of results
[ ]jp_QDMSDAC.tar.gz2015-04-17 15:42 86KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.