JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:51 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1pfva1.name2015-04-17 16:18 0 Job name flag file
[ ]jp_mXwDDZX.align2015-04-17 16:50 180KPSIBLAST alignment in FASTA format
[TXT]jp_mXwDDZX.als2015-04-17 16:50 2.2KAlscript command file for PS/PDF output
[ ]jp_mXwDDZX.blast.gz2015-04-17 16:49 4.5MCompressed PSIBLAST output file
[TXT]jp_mXwDDZX.coils.csv2015-04-17 16:50 1.0KCOILS output in CSV format
[ ]jp_mXwDDZX.coilseq.lupas_142015-04-17 16:50 6.8KCOILS output, window length 14
[ ]jp_mXwDDZX.coilseq.lupas_212015-04-17 16:50 6.8KCOILS output, window length 21
[ ]jp_mXwDDZX.coilseq.lupas_282015-04-17 16:50 6.8KCOILS output, window length 28
[ ]jp_mXwDDZX.concise2015-04-17 16:50 351KPrediction: coiled-coil, solvent, alignment
[ ]jp_mXwDDZX.concise.blc2015-04-17 16:50 179KBLC format prediction and alignment data
[ ]jp_mXwDDZX.concise.fasta2015-04-17 16:50 181KPrediction: coiled-coil, solvent, alignment
[ ]jp_mXwDDZX.concise.pdf2015-04-17 16:51 1.2MPDF prediction and alignment data
[ ]jp_mXwDDZX.concise.ps2015-04-17 16:50 22MPrediction: coiled-coil, solvent, alignment
[ ]jp_mXwDDZX.fasta2015-04-17 16:45 177 Input query sequence in FASTA format
[ ]jp_mXwDDZX.full_MSA.fasta2015-04-17 16:50 9.5MFull MSA before JPred filters in FASTA
[TXT]jp_mXwDDZX.full_MSA.fasta.noGaps.html2015-04-17 16:51 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_mXwDDZX.full_MSA.fasta.withGaps.html2015-04-17 16:51 24MFull MSA before JPred filters in FASTA
[ ]jp_mXwDDZX.hmm2015-04-17 16:50 30KHHMer2 profile of the alignment
[TXT]jp_mXwDDZX.html2015-04-17 16:50 389KHTML prediction and alignment data
[ ]jp_mXwDDZX.input2015-04-17 16:18 169 Raw input data for analysis
[ ]jp_mXwDDZX.jalview2015-04-17 16:50 4.1KJalview annotation file for alignment
[ ]jp_mXwDDZX.jnet2015-04-17 16:50 6.0KJnet secondary structure output
[TXT]jp_mXwDDZX.profile2015-04-17 16:48 26KPSIBLAST profile from alignment
[ ]jp_mXwDDZX.pssm2015-04-17 16:50 35KPSIBLAST PSSM for Jnet
[TXT]jp_mXwDDZX.results.html2016-02-15 12:18 73KJPred results page
[TXT]jp_mXwDDZX.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_mXwDDZX.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_mXwDDZX.seq2015-04-17 16:18 177 Sequence data file
[TXT]jp_mXwDDZX.simple.html2015-04-17 16:50 1.3KBrief HTML: sequence and prediction only
[TXT]jp_mXwDDZX.svg.html2015-04-17 16:51 64KJalview SVG summary of results
[ ]jp_mXwDDZX.tar.gz2015-04-17 16:51 8.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.