JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:27 4.9KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1pfva3.name2015-04-17 17:18 0 Job name flag file
[ ]jp_G3LIYAy.align2015-04-17 18:27 15KPSIBLAST alignment in FASTA format
[TXT]jp_G3LIYAy.als2015-04-17 18:27 1.3KAlscript command file for PS/PDF output
[ ]jp_G3LIYAy.blast.gz2015-04-17 18:26 190KCompressed PSIBLAST output file
[TXT]jp_G3LIYAy.coils.csv2015-04-17 18:27 240 COILS output in CSV format
[ ]jp_G3LIYAy.coilseq.lupas_142015-04-17 18:27 1.5KCOILS output, window length 14
[ ]jp_G3LIYAy.coilseq.lupas_212015-04-17 18:27 1.5KCOILS output, window length 21
[ ]jp_G3LIYAy.coilseq.lupas_282015-04-17 18:27 1.5KCOILS output, window length 28
[ ]jp_G3LIYAy.concise2015-04-17 18:27 28KPrediction: coiled-coil, solvent, alignment
[ ]jp_G3LIYAy.concise.blc2015-04-17 18:27 15KBLC format prediction and alignment data
[ ]jp_G3LIYAy.concise.fasta2015-04-17 18:27 15KPrediction: coiled-coil, solvent, alignment
[ ]jp_G3LIYAy.concise.pdf2015-04-17 18:27 2.2KPDF prediction and alignment data
[ ]jp_G3LIYAy.concise.ps2015-04-17 18:27 1.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_G3LIYAy.fasta2015-04-17 18:24 48 Input query sequence in FASTA format
[ ]jp_G3LIYAy.full_MSA.fasta2015-04-17 18:26 168KFull MSA before JPred filters in FASTA
[TXT]jp_G3LIYAy.full_MSA.fasta.noGaps.html2015-04-17 18:27 342KFull MSA before JPred filters in FASTA
[TXT]jp_G3LIYAy.full_MSA.fasta.withGaps.html2015-04-17 18:27 852KFull MSA before JPred filters in FASTA
[ ]jp_G3LIYAy.hmm2015-04-17 18:27 6.6KHHMer2 profile of the alignment
[TXT]jp_G3LIYAy.html2015-04-17 18:27 71KHTML prediction and alignment data
[ ]jp_G3LIYAy.input2015-04-17 17:18 42 Raw input data for analysis
[ ]jp_G3LIYAy.jalview2015-04-17 18:27 1.5KJalview annotation file for alignment
[ ]jp_G3LIYAy.jnet2015-04-17 18:27 1.4KJnet secondary structure output
[TXT]jp_G3LIYAy.profile2015-04-17 18:26 6.0KPSIBLAST profile from alignment
[ ]jp_G3LIYAy.pssm2015-04-17 18:27 7.5KPSIBLAST PSSM for Jnet
[TXT]jp_G3LIYAy.results.html2016-02-15 12:18 24KJPred results page
[TXT]jp_G3LIYAy.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_G3LIYAy.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_G3LIYAy.seq2015-04-17 17:18 48 Sequence data file
[TXT]jp_G3LIYAy.simple.html2015-04-17 18:27 951 Brief HTML: sequence and prediction only
[TXT]jp_G3LIYAy.svg.html2015-04-17 18:27 16KJalview SVG summary of results
[ ]jp_G3LIYAy.tar.gz2015-04-17 18:27 356KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.