JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:32 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1pi1a_.name2015-04-17 17:18 0 Job name flag file
[ ]jp_TgakPxe.align2015-04-17 18:32 100KPSIBLAST alignment in FASTA format
[TXT]jp_TgakPxe.als2015-04-17 18:32 2.4KAlscript command file for PS/PDF output
[ ]jp_TgakPxe.blast.gz2015-04-17 18:31 1.1MCompressed PSIBLAST output file
[TXT]jp_TgakPxe.coils.csv2015-04-17 18:32 1.1KCOILS output in CSV format
[ ]jp_TgakPxe.coilseq.lupas_142015-04-17 18:32 7.8KCOILS output, window length 14
[ ]jp_TgakPxe.coilseq.lupas_212015-04-17 18:32 7.8KCOILS output, window length 21
[ ]jp_TgakPxe.coilseq.lupas_282015-04-17 18:32 7.8KCOILS output, window length 28
[ ]jp_TgakPxe.concise2015-04-17 18:32 200KPrediction: coiled-coil, solvent, alignment
[ ]jp_TgakPxe.concise.blc2015-04-17 18:32 101KBLC format prediction and alignment data
[ ]jp_TgakPxe.concise.fasta2015-04-17 18:32 102KPrediction: coiled-coil, solvent, alignment
[ ]jp_TgakPxe.concise.pdf2015-04-17 18:32 700KPDF prediction and alignment data
[ ]jp_TgakPxe.concise.ps2015-04-17 18:32 12MPrediction: coiled-coil, solvent, alignment
[ ]jp_TgakPxe.fasta2015-04-17 18:25 200 Input query sequence in FASTA format
[ ]jp_TgakPxe.full_MSA.fasta2015-04-17 18:31 1.8MFull MSA before JPred filters in FASTA
[TXT]jp_TgakPxe.full_MSA.fasta.noGaps.html2015-04-17 18:32 399KFull MSA before JPred filters in FASTA
[TXT]jp_TgakPxe.full_MSA.fasta.withGaps.html2015-04-17 18:32 5.4MFull MSA before JPred filters in FASTA
[ ]jp_TgakPxe.hmm2015-04-17 18:32 35KHHMer2 profile of the alignment
[TXT]jp_TgakPxe.html2015-04-17 18:32 214KHTML prediction and alignment data
[ ]jp_TgakPxe.input2015-04-17 17:18 192 Raw input data for analysis
[ ]jp_TgakPxe.jalview2015-04-17 18:32 4.5KJalview annotation file for alignment
[ ]jp_TgakPxe.jnet2015-04-17 18:32 6.8KJnet secondary structure output
[TXT]jp_TgakPxe.profile2015-04-17 18:29 30KPSIBLAST profile from alignment
[ ]jp_TgakPxe.pssm2015-04-17 18:32 40KPSIBLAST PSSM for Jnet
[TXT]jp_TgakPxe.results.html2016-02-15 12:18 82KJPred results page
[TXT]jp_TgakPxe.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_TgakPxe.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_TgakPxe.seq2015-04-17 17:18 200 Sequence data file
[TXT]jp_TgakPxe.simple.html2015-04-17 18:32 1.4KBrief HTML: sequence and prediction only
[TXT]jp_TgakPxe.svg.html2015-04-17 18:32 74KJalview SVG summary of results
[ ]jp_TgakPxe.tar.gz2015-04-17 18:32 2.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.