JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:30 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ppjd2.name2015-04-17 16:05 0 Job name flag file
[ ]jp_n31_iW9.align2015-04-17 16:30 11KPSIBLAST alignment in FASTA format
[TXT]jp_n31_iW9.als2015-04-17 16:30 1.4KAlscript command file for PS/PDF output
[ ]jp_n31_iW9.blast.gz2015-04-17 16:30 43KCompressed PSIBLAST output file
[TXT]jp_n31_iW9.coils.csv2015-04-17 16:30 306 COILS output in CSV format
[ ]jp_n31_iW9.coilseq.lupas_142015-04-17 16:30 1.9KCOILS output, window length 14
[ ]jp_n31_iW9.coilseq.lupas_212015-04-17 16:30 1.9KCOILS output, window length 21
[ ]jp_n31_iW9.coilseq.lupas_282015-04-17 16:30 1.9KCOILS output, window length 28
[ ]jp_n31_iW9.concise2015-04-17 16:30 22KPrediction: coiled-coil, solvent, alignment
[ ]jp_n31_iW9.concise.blc2015-04-17 16:30 12KBLC format prediction and alignment data
[ ]jp_n31_iW9.concise.fasta2015-04-17 16:30 12KPrediction: coiled-coil, solvent, alignment
[ ]jp_n31_iW9.concise.pdf2015-04-17 16:30 69KPDF prediction and alignment data
[ ]jp_n31_iW9.concise.ps2015-04-17 16:30 1.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_n31_iW9.fasta2015-04-17 16:28 59 Input query sequence in FASTA format
[ ]jp_n31_iW9.full_MSA.fasta2015-04-17 16:30 37KFull MSA before JPred filters in FASTA
[TXT]jp_n31_iW9.full_MSA.fasta.noGaps.html2015-04-17 16:30 66KFull MSA before JPred filters in FASTA
[TXT]jp_n31_iW9.full_MSA.fasta.withGaps.html2015-04-17 16:30 124KFull MSA before JPred filters in FASTA
[ ]jp_n31_iW9.hmm2015-04-17 16:30 8.6KHHMer2 profile of the alignment
[TXT]jp_n31_iW9.html2015-04-17 16:30 52KHTML prediction and alignment data
[ ]jp_n31_iW9.input2015-04-17 16:05 53 Raw input data for analysis
[ ]jp_n31_iW9.jalview2015-04-17 16:30 1.8KJalview annotation file for alignment
[ ]jp_n31_iW9.jnet2015-04-17 16:30 1.8KJnet secondary structure output
[TXT]jp_n31_iW9.profile2015-04-17 16:29 7.8KPSIBLAST profile from alignment
[ ]jp_n31_iW9.pssm2015-04-17 16:30 9.9KPSIBLAST PSSM for Jnet
[TXT]jp_n31_iW9.results.html2016-02-15 12:18 29KJPred results page
[TXT]jp_n31_iW9.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_n31_iW9.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_n31_iW9.seq2015-04-17 16:05 59 Sequence data file
[TXT]jp_n31_iW9.simple.html2015-04-17 16:30 1.0KBrief HTML: sequence and prediction only
[TXT]jp_n31_iW9.svg.html2015-04-17 16:30 21KJalview SVG summary of results
[ ]jp_n31_iW9.tar.gz2015-04-17 16:30 169KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.