A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:29 | 4.7K | JPred server log file |
| README | 2016-02-15 12:18 | 2.1K | Results file descriptions |
| d1ppjf_.name | 2015-04-17 17:18 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_u3qVaFx.align | 2015-04-17 20:29 | 30K | PSIBLAST alignment in FASTA format |
| jp_u3qVaFx.als | 2015-04-17 20:29 | 1.9K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_u3qVaFx.blast.gz | 2015-04-17 20:28 | 131K | Compressed PSIBLAST output file |
| jp_u3qVaFx.coils.csv | 2015-04-17 20:29 | 624 | COILS output in CSV format |
| jp_u3qVaFx.coilseq.lupas_14 | 2015-04-17 20:29 | 4.2K | COILS output, window length 14 |
| jp_u3qVaFx.coilseq.lupas_21 | 2015-04-17 20:29 | 4.2K | COILS output, window length 21 |
| jp_u3qVaFx.coilseq.lupas_28 | 2015-04-17 20:29 | 4.2K | COILS output, window length 28 |
| jp_u3qVaFx.concise | 2015-04-17 20:29 | 60K | Prediction: coiled-coil, solvent, alignment |
| jp_u3qVaFx.concise.blc | 2015-04-17 20:29 | 31K | BLC format prediction and alignment data |
| jp_u3qVaFx.concise.fasta | 2015-04-17 20:29 | 31K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_u3qVaFx.concise.pdf | 2015-04-17 20:29 | 192K | PDF prediction and alignment data |
| jp_u3qVaFx.concise.ps | 2015-04-17 20:29 | 3.5M | Prediction: coiled-coil, solvent, alignment |
| jp_u3qVaFx.fasta | 2015-04-17 18:25 | 113 | Input query sequence in FASTA format |
| jp_u3qVaFx.full_MSA.fasta | 2015-04-17 20:29 | 152K | Full MSA before JPred filters in FASTA |
| jp_u3qVaFx.full_MSA.fasta.noGaps.html | 2015-04-17 20:29 | 101K | Full MSA before JPred filters in FASTA |
| jp_u3qVaFx.full_MSA.fasta.withGaps.html | 2015-04-17 20:29 | 598K | Full MSA before JPred filters in FASTA |
| jp_u3qVaFx.hmm | 2015-04-17 20:29 | 19K | HHMer2 profile of the alignment |
| jp_u3qVaFx.html | 2015-04-17 20:29 | 90K | HTML prediction and alignment data |
| jp_u3qVaFx.input | 2015-04-17 17:18 | 106 | Raw input data for analysis |
| jp_u3qVaFx.jalview | 2015-04-17 20:29 | 2.8K | Jalview annotation file for alignment |
| jp_u3qVaFx.jnet | 2015-04-17 20:29 | 3.7K | Jnet secondary structure output |
| jp_u3qVaFx.profile | 2015-04-17 20:14 | 16K | PSIBLAST profile from alignment |
| jp_u3qVaFx.pssm | 2015-04-17 20:29 | 21K | PSIBLAST PSSM for Jnet |
| jp_u3qVaFx.results.html | 2016-02-15 12:18 | 49K | JPred results page |
| jp_u3qVaFx.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_u3qVaFx.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_u3qVaFx.seq | 2015-04-17 17:18 | 113 | Sequence data file |
| jp_u3qVaFx.simple.html | 2015-04-17 20:29 | 1.2K | Brief HTML: sequence and prediction only |
![[TXT]](jp_u3qVaFx.svg.html) | jp_u3qVaFx.svg.html | 2015-04-17 20:29 | 41K | Jalview SVG summary of results |
| jp_u3qVaFx.tar.gz | 2015-04-17 20:29 | 443K | Archive containing complete results |
