JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:30 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ppjj_.name2015-04-17 15:28 0 Job name flag file
[ ]jp_2sBxtqo.align2015-04-17 15:30 5.4KPSIBLAST alignment in FASTA format
[TXT]jp_2sBxtqo.als2015-04-17 15:30 1.4KAlscript command file for PS/PDF output
[ ]jp_2sBxtqo.blast.gz2015-04-17 15:30 19KCompressed PSIBLAST output file
[TXT]jp_2sBxtqo.coils.csv2015-04-17 15:30 222 COILS output in CSV format
[ ]jp_2sBxtqo.coilseq.lupas_142015-04-17 15:30 1.3KCOILS output, window length 14
[ ]jp_2sBxtqo.coilseq.lupas_212015-04-17 15:30 1.3KCOILS output, window length 21
[ ]jp_2sBxtqo.coilseq.lupas_282015-04-17 15:30 1.3KCOILS output, window length 28
[ ]jp_2sBxtqo.concise2015-04-17 15:30 11KPrediction: coiled-coil, solvent, alignment
[ ]jp_2sBxtqo.concise.blc2015-04-17 15:30 5.8KBLC format prediction and alignment data
[ ]jp_2sBxtqo.concise.fasta2015-04-17 15:30 5.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_2sBxtqo.concise.pdf2015-04-17 15:30 28KPDF prediction and alignment data
[ ]jp_2sBxtqo.concise.ps2015-04-17 15:30 514KPrediction: coiled-coil, solvent, alignment
[ ]jp_2sBxtqo.fasta2015-04-17 15:28 45 Input query sequence in FASTA format
[ ]jp_2sBxtqo.full_MSA.fasta2015-04-17 15:30 19KFull MSA before JPred filters in FASTA
[TXT]jp_2sBxtqo.full_MSA.fasta.noGaps.html2015-04-17 15:30 36KFull MSA before JPred filters in FASTA
[TXT]jp_2sBxtqo.full_MSA.fasta.withGaps.html2015-04-17 15:30 49KFull MSA before JPred filters in FASTA
[ ]jp_2sBxtqo.hmm2015-04-17 15:30 6.0KHHMer2 profile of the alignment
[TXT]jp_2sBxtqo.html2015-04-17 15:30 31KHTML prediction and alignment data
[ ]jp_2sBxtqo.input2015-04-17 15:28 39 Raw input data for analysis
[ ]jp_2sBxtqo.jalview2015-04-17 15:30 1.5KJalview annotation file for alignment
[ ]jp_2sBxtqo.jnet2015-04-17 15:30 1.3KJnet secondary structure output
[TXT]jp_2sBxtqo.profile2015-04-17 15:29 5.6KPSIBLAST profile from alignment
[ ]jp_2sBxtqo.pssm2015-04-17 15:30 6.9KPSIBLAST PSSM for Jnet
[TXT]jp_2sBxtqo.results.html2016-02-15 12:18 24KJPred results page
[TXT]jp_2sBxtqo.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_2sBxtqo.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_2sBxtqo.seq2015-04-17 15:28 45 Sequence data file
[TXT]jp_2sBxtqo.simple.html2015-04-17 15:30 1.0KBrief HTML: sequence and prediction only
[TXT]jp_2sBxtqo.svg.html2015-04-17 15:30 16KJalview SVG summary of results
[ ]jp_2sBxtqo.tar.gz2015-04-17 15:30 80KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.