JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:37 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1puca_.name2015-04-17 19:09 0 Job name flag file
[ ]jp_85SQkFN.align2015-04-17 21:36 24KPSIBLAST alignment in FASTA format
[TXT]jp_85SQkFN.als2015-04-17 21:36 2.3KAlscript command file for PS/PDF output
[ ]jp_85SQkFN.blast.gz2015-04-17 21:36 138KCompressed PSIBLAST output file
[TXT]jp_85SQkFN.coils.csv2015-04-17 21:36 636 COILS output in CSV format
[ ]jp_85SQkFN.coilseq.lupas_142015-04-17 21:36 4.2KCOILS output, window length 14
[ ]jp_85SQkFN.coilseq.lupas_212015-04-17 21:36 4.2KCOILS output, window length 21
[ ]jp_85SQkFN.coilseq.lupas_282015-04-17 21:36 4.2KCOILS output, window length 28
[ ]jp_85SQkFN.concise2015-04-17 21:36 50KPrediction: coiled-coil, solvent, alignment
[ ]jp_85SQkFN.concise.blc2015-04-17 21:36 26KBLC format prediction and alignment data
[ ]jp_85SQkFN.concise.fasta2015-04-17 21:36 25KPrediction: coiled-coil, solvent, alignment
[ ]jp_85SQkFN.concise.pdf2015-04-17 21:36 146KPDF prediction and alignment data
[ ]jp_85SQkFN.concise.ps2015-04-17 21:36 2.7MPrediction: coiled-coil, solvent, alignment
[ ]jp_85SQkFN.fasta2015-04-17 21:30 115 Input query sequence in FASTA format
[ ]jp_85SQkFN.full_MSA.fasta2015-04-17 21:36 228KFull MSA before JPred filters in FASTA
[TXT]jp_85SQkFN.full_MSA.fasta.noGaps.html2015-04-17 21:36 117KFull MSA before JPred filters in FASTA
[TXT]jp_85SQkFN.full_MSA.fasta.withGaps.html2015-04-17 21:36 886KFull MSA before JPred filters in FASTA
[ ]jp_85SQkFN.hmm2015-04-17 21:36 19KHHMer2 profile of the alignment
[TXT]jp_85SQkFN.html2015-04-17 21:36 74KHTML prediction and alignment data
[ ]jp_85SQkFN.input2015-04-17 19:09 108 Raw input data for analysis
[ ]jp_85SQkFN.jalview2015-04-17 21:36 2.8KJalview annotation file for alignment
[ ]jp_85SQkFN.jnet2015-04-17 21:36 3.8KJnet secondary structure output
[TXT]jp_85SQkFN.profile2015-04-17 21:34 16KPSIBLAST profile from alignment
[ ]jp_85SQkFN.pssm2015-04-17 21:36 22KPSIBLAST PSSM for Jnet
[TXT]jp_85SQkFN.results.html2016-02-15 12:18 51KJPred results page
[TXT]jp_85SQkFN.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_85SQkFN.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_85SQkFN.seq2015-04-17 19:09 115 Sequence data file
[TXT]jp_85SQkFN.simple.html2015-04-17 21:36 1.2KBrief HTML: sequence and prediction only
[TXT]jp_85SQkFN.svg.html2015-04-17 21:37 43KJalview SVG summary of results
[ ]jp_85SQkFN.tar.gz2015-04-17 21:37 397KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.