JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_SSTcD8s.input2015-04-17 16:42 268 Raw input data for analysis
[ ]jp_SSTcD8s.seq2015-04-17 16:42 277 Sequence data file
[TXT]d1pv5a_.name2015-04-17 16:42 0 Job name flag file
[ ]jp_SSTcD8s.fasta2015-04-17 17:24 277 Input query sequence in FASTA format
[TXT]jp_SSTcD8s.profile2015-04-17 17:26 42KPSIBLAST profile from alignment
[ ]jp_SSTcD8s.blast.gz2015-04-17 17:27 1.2MCompressed PSIBLAST output file
[ ]jp_SSTcD8s.full_MSA.fasta2015-04-17 17:27 2.5MFull MSA before JPred filters in FASTA
[ ]jp_SSTcD8s.align2015-04-17 17:27 182KPSIBLAST alignment in FASTA format
[ ]jp_SSTcD8s.pssm2015-04-17 17:27 56KPSIBLAST PSSM for Jnet
[ ]jp_SSTcD8s.hmm2015-04-17 17:27 49KHHMer2 profile of the alignment
[ ]jp_SSTcD8s.jnet2015-04-17 17:27 9.5KJnet secondary structure output
[ ]jp_SSTcD8s.coilseq.lupas_212015-04-17 17:27 11KCOILS output, window length 21
[ ]jp_SSTcD8s.coilseq.lupas_142015-04-17 17:27 11KCOILS output, window length 14
[ ]jp_SSTcD8s.coilseq.lupas_282015-04-17 17:27 11KCOILS output, window length 28
[TXT]jp_SSTcD8s.coils.csv2015-04-17 17:27 1.6KCOILS output in CSV format
[ ]jp_SSTcD8s.concise2015-04-17 17:27 363KPrediction: coiled-coil, solvent, alignment
[TXT]jp_SSTcD8s.html2015-04-17 17:27 327KHTML prediction and alignment data
[TXT]jp_SSTcD8s.simple.html2015-04-17 17:27 1.7KBrief HTML: sequence and prediction only
[ ]jp_SSTcD8s.jalview2015-04-17 17:27 5.9KJalview annotation file for alignment
[ ]jp_SSTcD8s.concise.fasta2015-04-17 17:27 185KPrediction: coiled-coil, solvent, alignment
[ ]jp_SSTcD8s.concise.blc2015-04-17 17:27 183KBLC format prediction and alignment data
[TXT]jp_SSTcD8s.als2015-04-17 17:27 3.3KAlscript command file for PS/PDF output
[ ]jp_SSTcD8s.concise.ps2015-04-17 17:27 23MPrediction: coiled-coil, solvent, alignment
[ ]jp_SSTcD8s.concise.pdf2015-04-17 17:28 1.3MPDF prediction and alignment data
[TXT]jp_SSTcD8s.full_MSA.fasta.withGaps.html2015-04-17 17:28 7.1MFull MSA before JPred filters in FASTA
[TXT]jp_SSTcD8s.full_MSA.fasta.noGaps.html2015-04-17 17:28 326KFull MSA before JPred filters in FASTA
[TXT]jp_SSTcD8s.svg.html2015-04-17 17:28 102KJalview SVG summary of results
[TXT]LOG2015-04-17 17:28 4.7KJPred server log file
[ ]jp_SSTcD8s.tar.gz2015-04-17 17:28 3.6MArchive containing complete results
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]jp_SSTcD8s.results.html2016-02-15 12:18 110KJPred results page
[TXT]jp_SSTcD8s.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_SSTcD8s.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.