JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:29 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1px5a1.name2015-04-17 17:18 0 Job name flag file
[ ]jp_ekSRXLT.align2015-04-17 20:29 55KPSIBLAST alignment in FASTA format
[TXT]jp_ekSRXLT.als2015-04-17 20:29 2.2KAlscript command file for PS/PDF output
[ ]jp_ekSRXLT.blast.gz2015-04-17 20:29 216KCompressed PSIBLAST output file
[TXT]jp_ekSRXLT.coils.csv2015-04-17 20:29 906 COILS output in CSV format
[ ]jp_ekSRXLT.coilseq.lupas_142015-04-17 20:29 6.1KCOILS output, window length 14
[ ]jp_ekSRXLT.coilseq.lupas_212015-04-17 20:29 6.1KCOILS output, window length 21
[ ]jp_ekSRXLT.coilseq.lupas_282015-04-17 20:29 6.1KCOILS output, window length 28
[ ]jp_ekSRXLT.concise2015-04-17 20:29 110KPrediction: coiled-coil, solvent, alignment
[ ]jp_ekSRXLT.concise.blc2015-04-17 20:29 56KBLC format prediction and alignment data
[ ]jp_ekSRXLT.concise.fasta2015-04-17 20:29 57KPrediction: coiled-coil, solvent, alignment
[ ]jp_ekSRXLT.concise.pdf2015-04-17 20:29 330KPDF prediction and alignment data
[ ]jp_ekSRXLT.concise.ps2015-04-17 20:29 6.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_ekSRXLT.fasta2015-04-17 18:25 161 Input query sequence in FASTA format
[ ]jp_ekSRXLT.full_MSA.fasta2015-04-17 20:29 294KFull MSA before JPred filters in FASTA
[TXT]jp_ekSRXLT.full_MSA.fasta.noGaps.html2015-04-17 20:29 174KFull MSA before JPred filters in FASTA
[TXT]jp_ekSRXLT.full_MSA.fasta.withGaps.html2015-04-17 20:29 1.4MFull MSA before JPred filters in FASTA
[ ]jp_ekSRXLT.hmm2015-04-17 20:29 27KHHMer2 profile of the alignment
[TXT]jp_ekSRXLT.html2015-04-17 20:29 132KHTML prediction and alignment data
[ ]jp_ekSRXLT.input2015-04-17 17:18 153 Raw input data for analysis
[ ]jp_ekSRXLT.jalview2015-04-17 20:29 3.7KJalview annotation file for alignment
[ ]jp_ekSRXLT.jnet2015-04-17 20:29 5.4KJnet secondary structure output
[TXT]jp_ekSRXLT.profile2015-04-17 20:10 24KPSIBLAST profile from alignment
[ ]jp_ekSRXLT.pssm2015-04-17 20:29 31KPSIBLAST PSSM for Jnet
[TXT]jp_ekSRXLT.results.html2016-02-15 12:18 67KJPred results page
[TXT]jp_ekSRXLT.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ekSRXLT.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ekSRXLT.seq2015-04-17 17:18 161 Sequence data file
[TXT]jp_ekSRXLT.simple.html2015-04-17 20:29 1.3KBrief HTML: sequence and prediction only
[TXT]jp_ekSRXLT.svg.html2015-04-17 20:29 59KJalview SVG summary of results
[ ]jp_ekSRXLT.tar.gz2015-04-17 20:29 737KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.