JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_JqDBU_R.input2015-04-17 15:28 109 Raw input data for analysis
[ ]jp_JqDBU_R.seq2015-04-17 15:28 116 Sequence data file
[TXT]d1qw2a_.name2015-04-17 15:28 0 Job name flag file
[ ]jp_JqDBU_R.fasta2015-04-17 15:31 116 Input query sequence in FASTA format
[TXT]jp_JqDBU_R.profile2015-04-17 15:32 17KPSIBLAST profile from alignment
[ ]jp_JqDBU_R.blast.gz2015-04-17 15:33 41KCompressed PSIBLAST output file
[ ]jp_JqDBU_R.full_MSA.fasta2015-04-17 15:33 38KFull MSA before JPred filters in FASTA
[ ]jp_JqDBU_R.align2015-04-17 15:33 16KPSIBLAST alignment in FASTA format
[ ]jp_JqDBU_R.pssm2015-04-17 15:33 22KPSIBLAST PSSM for Jnet
[ ]jp_JqDBU_R.hmm2015-04-17 15:33 19KHHMer2 profile of the alignment
[ ]jp_JqDBU_R.jnet2015-04-17 15:33 3.8KJnet secondary structure output
[ ]jp_JqDBU_R.coilseq.lupas_212015-04-17 15:33 4.3KCOILS output, window length 21
[ ]jp_JqDBU_R.coilseq.lupas_142015-04-17 15:33 4.3KCOILS output, window length 14
[ ]jp_JqDBU_R.coilseq.lupas_282015-04-17 15:33 4.3KCOILS output, window length 28
[TXT]jp_JqDBU_R.coils.csv2015-04-17 15:33 642 COILS output in CSV format
[ ]jp_JqDBU_R.concise2015-04-17 15:33 35KPrediction: coiled-coil, solvent, alignment
[TXT]jp_JqDBU_R.html2015-04-17 15:33 54KHTML prediction and alignment data
[TXT]jp_JqDBU_R.simple.html2015-04-17 15:33 1.3KBrief HTML: sequence and prediction only
[ ]jp_JqDBU_R.jalview2015-04-17 15:33 2.9KJalview annotation file for alignment
[ ]jp_JqDBU_R.concise.fasta2015-04-17 15:33 17KPrediction: coiled-coil, solvent, alignment
[ ]jp_JqDBU_R.concise.blc2015-04-17 15:33 18KBLC format prediction and alignment data
[TXT]jp_JqDBU_R.als2015-04-17 15:33 2.5KAlscript command file for PS/PDF output
[ ]jp_JqDBU_R.concise.ps2015-04-17 15:33 2.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_JqDBU_R.concise.pdf2015-04-17 15:33 114KPDF prediction and alignment data
[TXT]jp_JqDBU_R.full_MSA.fasta.withGaps.html2015-04-17 15:33 160KFull MSA before JPred filters in FASTA
[TXT]jp_JqDBU_R.full_MSA.fasta.noGaps.html2015-04-17 15:33 48KFull MSA before JPred filters in FASTA
[TXT]jp_JqDBU_R.svg.html2015-04-17 15:33 44KJalview SVG summary of results
[TXT]LOG2015-04-17 15:33 4.7KJPred server log file
[ ]jp_JqDBU_R.tar.gz2015-04-17 15:33 224KArchive containing complete results
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]jp_JqDBU_R.results.html2016-02-15 12:18 52KJPred results page
[TXT]jp_JqDBU_R.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_JqDBU_R.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.