JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:56 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1r0ri_.name2015-04-17 16:06 0 Job name flag file
[ ]jp_e8hD6vm.align2015-04-17 16:56 57KPSIBLAST alignment in FASTA format
[TXT]jp_e8hD6vm.als2015-04-17 16:56 1.5KAlscript command file for PS/PDF output
[ ]jp_e8hD6vm.blast.gz2015-04-17 16:55 490KCompressed PSIBLAST output file
[TXT]jp_e8hD6vm.coils.csv2015-04-17 16:56 336 COILS output in CSV format
[ ]jp_e8hD6vm.coilseq.lupas_142015-04-17 16:56 2.1KCOILS output, window length 14
[ ]jp_e8hD6vm.coilseq.lupas_212015-04-17 16:56 2.1KCOILS output, window length 21
[ ]jp_e8hD6vm.coilseq.lupas_282015-04-17 16:56 2.1KCOILS output, window length 28
[ ]jp_e8hD6vm.concise2015-04-17 16:56 105KPrediction: coiled-coil, solvent, alignment
[ ]jp_e8hD6vm.concise.blc2015-04-17 16:56 57KBLC format prediction and alignment data
[ ]jp_e8hD6vm.concise.fasta2015-04-17 16:56 57KPrediction: coiled-coil, solvent, alignment
[ ]jp_e8hD6vm.concise.pdf2015-04-17 16:56 282KPDF prediction and alignment data
[ ]jp_e8hD6vm.concise.ps2015-04-17 16:56 5.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_e8hD6vm.fasta2015-04-17 16:29 64 Input query sequence in FASTA format
[ ]jp_e8hD6vm.full_MSA.fasta2015-04-17 16:55 1.2MFull MSA before JPred filters in FASTA
[TXT]jp_e8hD6vm.full_MSA.fasta.noGaps.html2015-04-17 16:56 711KFull MSA before JPred filters in FASTA
[TXT]jp_e8hD6vm.full_MSA.fasta.withGaps.html2015-04-17 16:56 5.3MFull MSA before JPred filters in FASTA
[ ]jp_e8hD6vm.hmm2015-04-17 16:56 9.6KHHMer2 profile of the alignment
[TXT]jp_e8hD6vm.html2015-04-17 16:56 217KHTML prediction and alignment data
[ ]jp_e8hD6vm.input2015-04-17 16:06 58 Raw input data for analysis
[ ]jp_e8hD6vm.jalview2015-04-17 16:56 1.8KJalview annotation file for alignment
[ ]jp_e8hD6vm.jnet2015-04-17 16:56 2.0KJnet secondary structure output
[TXT]jp_e8hD6vm.profile2015-04-17 16:42 8.6KPSIBLAST profile from alignment
[ ]jp_e8hD6vm.pssm2015-04-17 16:56 11KPSIBLAST PSSM for Jnet
[TXT]jp_e8hD6vm.results.html2016-02-15 12:18 30KJPred results page
[TXT]jp_e8hD6vm.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_e8hD6vm.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_e8hD6vm.seq2015-04-17 16:06 64 Sequence data file
[TXT]jp_e8hD6vm.simple.html2015-04-17 16:56 1.0KBrief HTML: sequence and prediction only
[TXT]jp_e8hD6vm.svg.html2015-04-17 16:56 22KJalview SVG summary of results
[ ]jp_e8hD6vm.tar.gz2015-04-17 16:56 1.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.