JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:23 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1r29a_.name2015-04-17 17:55 0 Job name flag file
[ ]jp_C3o7arC.align2015-04-17 20:22 89KPSIBLAST alignment in FASTA format
[TXT]jp_C3o7arC.als2015-04-17 20:22 2.2KAlscript command file for PS/PDF output
[ ]jp_C3o7arC.blast.gz2015-04-17 20:20 7.4MCompressed PSIBLAST output file
[TXT]jp_C3o7arC.coils.csv2015-04-17 20:22 762 COILS output in CSV format
[ ]jp_C3o7arC.coilseq.lupas_142015-04-17 20:22 5.1KCOILS output, window length 14
[ ]jp_C3o7arC.coilseq.lupas_212015-04-17 20:22 5.1KCOILS output, window length 21
[ ]jp_C3o7arC.coilseq.lupas_282015-04-17 20:22 5.1KCOILS output, window length 28
[ ]jp_C3o7arC.concise2015-04-17 20:22 174KPrediction: coiled-coil, solvent, alignment
[ ]jp_C3o7arC.concise.blc2015-04-17 20:22 89KBLC format prediction and alignment data
[ ]jp_C3o7arC.concise.fasta2015-04-17 20:22 90KPrediction: coiled-coil, solvent, alignment
[ ]jp_C3o7arC.concise.pdf2015-04-17 20:23 623KPDF prediction and alignment data
[ ]jp_C3o7arC.concise.ps2015-04-17 20:22 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_C3o7arC.fasta2015-04-17 19:28 136 Input query sequence in FASTA format
[ ]jp_C3o7arC.full_MSA.fasta2015-04-17 20:22 14MFull MSA before JPred filters in FASTA
[TXT]jp_C3o7arC.full_MSA.fasta.noGaps.html2015-04-17 20:23 2.3MFull MSA before JPred filters in FASTA
[TXT]jp_C3o7arC.full_MSA.fasta.withGaps.html2015-04-17 20:23 40MFull MSA before JPred filters in FASTA
[ ]jp_C3o7arC.hmm2015-04-17 20:22 23KHHMer2 profile of the alignment
[TXT]jp_C3o7arC.html2015-04-17 20:22 223KHTML prediction and alignment data
[ ]jp_C3o7arC.input2015-04-17 17:55 129 Raw input data for analysis
[ ]jp_C3o7arC.jalview2015-04-17 20:22 3.3KJalview annotation file for alignment
[ ]jp_C3o7arC.jnet2015-04-17 20:22 4.5KJnet secondary structure output
[TXT]jp_C3o7arC.profile2015-04-17 20:19 20KPSIBLAST profile from alignment
[ ]jp_C3o7arC.pssm2015-04-17 20:22 26KPSIBLAST PSSM for Jnet
[TXT]jp_C3o7arC.results.html2016-02-15 12:18 59KJPred results page
[TXT]jp_C3o7arC.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_C3o7arC.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_C3o7arC.seq2015-04-17 17:55 136 Sequence data file
[TXT]jp_C3o7arC.simple.html2015-04-17 20:22 1.3KBrief HTML: sequence and prediction only
[TXT]jp_C3o7arC.svg.html2015-04-17 20:23 51KJalview SVG summary of results
[ ]jp_C3o7arC.tar.gz2015-04-17 20:23 12MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.