JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:34 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1r5la1.name2015-04-17 15:28 0 Job name flag file
[ ]jp_PIEcsgb.align2015-04-17 15:33 76KPSIBLAST alignment in FASTA format
[TXT]jp_PIEcsgb.als2015-04-17 15:33 1.7KAlscript command file for PS/PDF output
[ ]jp_PIEcsgb.blast.gz2015-04-17 15:33 550KCompressed PSIBLAST output file
[TXT]jp_PIEcsgb.coils.csv2015-04-17 15:33 426 COILS output in CSV format
[ ]jp_PIEcsgb.coilseq.lupas_142015-04-17 15:33 2.8KCOILS output, window length 14
[ ]jp_PIEcsgb.coilseq.lupas_212015-04-17 15:33 2.8KCOILS output, window length 21
[ ]jp_PIEcsgb.coilseq.lupas_282015-04-17 15:33 2.8KCOILS output, window length 28
[ ]jp_PIEcsgb.concise2015-04-17 15:33 145KPrediction: coiled-coil, solvent, alignment
[ ]jp_PIEcsgb.concise.blc2015-04-17 15:33 76KBLC format prediction and alignment data
[ ]jp_PIEcsgb.concise.fasta2015-04-17 15:33 77KPrediction: coiled-coil, solvent, alignment
[ ]jp_PIEcsgb.concise.pdf2015-04-17 15:34 434KPDF prediction and alignment data
[ ]jp_PIEcsgb.concise.ps2015-04-17 15:33 7.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_PIEcsgb.fasta2015-04-17 15:31 79 Input query sequence in FASTA format
[ ]jp_PIEcsgb.full_MSA.fasta2015-04-17 15:33 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_PIEcsgb.full_MSA.fasta.noGaps.html2015-04-17 15:34 586KFull MSA before JPred filters in FASTA
[TXT]jp_PIEcsgb.full_MSA.fasta.withGaps.html2015-04-17 15:34 5.5MFull MSA before JPred filters in FASTA
[ ]jp_PIEcsgb.hmm2015-04-17 15:33 12KHHMer2 profile of the alignment
[TXT]jp_PIEcsgb.html2015-04-17 15:33 261KHTML prediction and alignment data
[ ]jp_PIEcsgb.input2015-04-17 15:28 73 Raw input data for analysis
[ ]jp_PIEcsgb.jalview2015-04-17 15:33 2.2KJalview annotation file for alignment
[ ]jp_PIEcsgb.jnet2015-04-17 15:33 2.5KJnet secondary structure output
[TXT]jp_PIEcsgb.profile2015-04-17 15:32 11KPSIBLAST profile from alignment
[ ]jp_PIEcsgb.pssm2015-04-17 15:33 14KPSIBLAST PSSM for Jnet
[TXT]jp_PIEcsgb.results.html2016-02-15 12:18 37KJPred results page
[TXT]jp_PIEcsgb.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_PIEcsgb.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_PIEcsgb.seq2015-04-17 15:28 79 Sequence data file
[TXT]jp_PIEcsgb.simple.html2015-04-17 15:33 1.1KBrief HTML: sequence and prediction only
[TXT]jp_PIEcsgb.svg.html2015-04-17 15:34 29KJalview SVG summary of results
[ ]jp_PIEcsgb.tar.gz2015-04-17 15:34 1.6MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.