JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:26 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1r5la2.name2015-04-17 15:29 0 Job name flag file
[ ]jp_m5hXW6O.align2015-04-17 16:25 174KPSIBLAST alignment in FASTA format
[TXT]jp_m5hXW6O.als2015-04-17 16:25 2.9KAlscript command file for PS/PDF output
[ ]jp_m5hXW6O.blast.gz2015-04-17 16:23 5.1MCompressed PSIBLAST output file
[TXT]jp_m5hXW6O.coils.csv2015-04-17 16:25 1.1KCOILS output in CSV format
[ ]jp_m5hXW6O.coilseq.lupas_142015-04-17 16:25 7.8KCOILS output, window length 14
[ ]jp_m5hXW6O.coilseq.lupas_212015-04-17 16:25 7.8KCOILS output, window length 21
[ ]jp_m5hXW6O.coilseq.lupas_282015-04-17 16:25 7.8KCOILS output, window length 28
[ ]jp_m5hXW6O.concise2015-04-17 16:25 344KPrediction: coiled-coil, solvent, alignment
[ ]jp_m5hXW6O.concise.blc2015-04-17 16:25 175KBLC format prediction and alignment data
[ ]jp_m5hXW6O.concise.fasta2015-04-17 16:25 176KPrediction: coiled-coil, solvent, alignment
[ ]jp_m5hXW6O.concise.pdf2015-04-17 16:26 1.2MPDF prediction and alignment data
[ ]jp_m5hXW6O.concise.ps2015-04-17 16:25 21MPrediction: coiled-coil, solvent, alignment
[ ]jp_m5hXW6O.fasta2015-04-17 15:31 200 Input query sequence in FASTA format
[ ]jp_m5hXW6O.full_MSA.fasta2015-04-17 16:24 10MFull MSA before JPred filters in FASTA
[TXT]jp_m5hXW6O.full_MSA.fasta.noGaps.html2015-04-17 16:26 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_m5hXW6O.full_MSA.fasta.withGaps.html2015-04-17 16:26 30MFull MSA before JPred filters in FASTA
[ ]jp_m5hXW6O.hmm2015-04-17 16:25 35KHHMer2 profile of the alignment
[TXT]jp_m5hXW6O.html2015-04-17 16:25 360KHTML prediction and alignment data
[ ]jp_m5hXW6O.input2015-04-17 15:29 192 Raw input data for analysis
[ ]jp_m5hXW6O.jalview2015-04-17 16:25 4.6KJalview annotation file for alignment
[ ]jp_m5hXW6O.jnet2015-04-17 16:25 6.8KJnet secondary structure output
[TXT]jp_m5hXW6O.profile2015-04-17 16:12 30KPSIBLAST profile from alignment
[ ]jp_m5hXW6O.pssm2015-04-17 16:25 40KPSIBLAST PSSM for Jnet
[TXT]jp_m5hXW6O.results.html2016-02-15 12:18 83KJPred results page
[TXT]jp_m5hXW6O.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_m5hXW6O.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_m5hXW6O.seq2015-04-17 15:29 200 Sequence data file
[TXT]jp_m5hXW6O.simple.html2015-04-17 16:25 1.5KBrief HTML: sequence and prediction only
[TXT]jp_m5hXW6O.svg.html2015-04-17 16:26 75KJalview SVG summary of results
[ ]jp_m5hXW6O.tar.gz2015-04-17 16:26 9.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.