JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:36 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1rc9a2.name2015-04-17 15:29 0 Job name flag file
[ ]jp_QbB7DDI.align2015-04-17 15:36 13KPSIBLAST alignment in FASTA format
[TXT]jp_QbB7DDI.als2015-04-17 15:36 1.8KAlscript command file for PS/PDF output
[ ]jp_QbB7DDI.blast.gz2015-04-17 15:36 47KCompressed PSIBLAST output file
[TXT]jp_QbB7DDI.coils.csv2015-04-17 15:36 372 COILS output in CSV format
[ ]jp_QbB7DDI.coilseq.lupas_142015-04-17 15:36 2.4KCOILS output, window length 14
[ ]jp_QbB7DDI.coilseq.lupas_212015-04-17 15:36 2.4KCOILS output, window length 21
[ ]jp_QbB7DDI.coilseq.lupas_282015-04-17 15:36 2.4KCOILS output, window length 28
[ ]jp_QbB7DDI.concise2015-04-17 15:36 27KPrediction: coiled-coil, solvent, alignment
[ ]jp_QbB7DDI.concise.blc2015-04-17 15:36 14KBLC format prediction and alignment data
[ ]jp_QbB7DDI.concise.fasta2015-04-17 15:36 14KPrediction: coiled-coil, solvent, alignment
[ ]jp_QbB7DDI.concise.pdf2015-04-17 15:36 73KPDF prediction and alignment data
[ ]jp_QbB7DDI.concise.ps2015-04-17 15:36 1.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_QbB7DDI.fasta2015-04-17 15:31 70 Input query sequence in FASTA format
[ ]jp_QbB7DDI.full_MSA.fasta2015-04-17 15:36 43KFull MSA before JPred filters in FASTA
[TXT]jp_QbB7DDI.full_MSA.fasta.noGaps.html2015-04-17 15:36 60KFull MSA before JPred filters in FASTA
[TXT]jp_QbB7DDI.full_MSA.fasta.withGaps.html2015-04-17 15:36 241KFull MSA before JPred filters in FASTA
[ ]jp_QbB7DDI.hmm2015-04-17 15:36 11KHHMer2 profile of the alignment
[TXT]jp_QbB7DDI.html2015-04-17 15:36 53KHTML prediction and alignment data
[ ]jp_QbB7DDI.input2015-04-17 15:29 64 Raw input data for analysis
[ ]jp_QbB7DDI.jalview2015-04-17 15:36 1.9KJalview annotation file for alignment
[ ]jp_QbB7DDI.jnet2015-04-17 15:36 2.2KJnet secondary structure output
[TXT]jp_QbB7DDI.profile2015-04-17 15:35 9.5KPSIBLAST profile from alignment
[ ]jp_QbB7DDI.pssm2015-04-17 15:36 12KPSIBLAST PSSM for Jnet
[TXT]jp_QbB7DDI.results.html2016-02-15 12:18 34KJPred results page
[TXT]jp_QbB7DDI.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_QbB7DDI.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_QbB7DDI.seq2015-04-17 15:29 70 Sequence data file
[TXT]jp_QbB7DDI.simple.html2015-04-17 15:36 1.1KBrief HTML: sequence and prediction only
[TXT]jp_QbB7DDI.svg.html2015-04-17 15:36 26KJalview SVG summary of results
[ ]jp_QbB7DDI.tar.gz2015-04-17 15:36 188KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.