JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:39 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1rfya_.name2015-04-17 19:10 0 Job name flag file
[ ]jp_losAtfI.align2015-04-17 21:39 2.6KPSIBLAST alignment in FASTA format
[TXT]jp_losAtfI.als2015-04-17 21:39 1.6KAlscript command file for PS/PDF output
[ ]jp_losAtfI.blast.gz2015-04-17 21:39 6.2KCompressed PSIBLAST output file
[TXT]jp_losAtfI.coils.csv2015-04-17 21:39 564 COILS output in CSV format
[ ]jp_losAtfI.coilseq.lupas_142015-04-17 21:39 3.7KCOILS output, window length 14
[ ]jp_losAtfI.coilseq.lupas_212015-04-17 21:39 3.7KCOILS output, window length 21
[ ]jp_losAtfI.coilseq.lupas_282015-04-17 21:39 3.7KCOILS output, window length 28
[ ]jp_losAtfI.concise2015-04-17 21:39 8.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_losAtfI.concise.blc2015-04-17 21:39 3.9KBLC format prediction and alignment data
[ ]jp_losAtfI.concise.fasta2015-04-17 21:39 3.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_losAtfI.concise.pdf2015-04-17 21:39 27KPDF prediction and alignment data
[ ]jp_losAtfI.concise.ps2015-04-17 21:39 444KPrediction: coiled-coil, solvent, alignment
[ ]jp_losAtfI.fasta2015-04-17 21:32 103 Input query sequence in FASTA format
[ ]jp_losAtfI.full_MSA.fasta2015-04-17 21:39 5.4KFull MSA before JPred filters in FASTA
[TXT]jp_losAtfI.full_MSA.fasta.noGaps.html2015-04-17 21:39 8.8KFull MSA before JPred filters in FASTA
[TXT]jp_losAtfI.full_MSA.fasta.withGaps.html2015-04-17 21:39 18KFull MSA before JPred filters in FASTA
[ ]jp_losAtfI.hmm2015-04-17 21:39 17KHHMer2 profile of the alignment
[TXT]jp_losAtfI.html2015-04-17 21:39 18KHTML prediction and alignment data
[ ]jp_losAtfI.input2015-04-17 19:10 96 Raw input data for analysis
[ ]jp_losAtfI.jalview2015-04-17 21:39 2.6KJalview annotation file for alignment
[ ]jp_losAtfI.jnet2015-04-17 21:39 3.3KJnet secondary structure output
[TXT]jp_losAtfI.profile2015-04-17 21:37 15KPSIBLAST profile from alignment
[ ]jp_losAtfI.pssm2015-04-17 21:39 19KPSIBLAST PSSM for Jnet
[TXT]jp_losAtfI.results.html2016-02-15 12:18 44KJPred results page
[TXT]jp_losAtfI.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_losAtfI.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_losAtfI.seq2015-04-17 19:10 103 Sequence data file
[TXT]jp_losAtfI.simple.html2015-04-17 21:39 1.1KBrief HTML: sequence and prediction only
[TXT]jp_losAtfI.svg.html2015-04-17 21:39 36KJalview SVG summary of results
[ ]jp_losAtfI.tar.gz2015-04-17 21:39 64KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.