JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:38 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1rg8a_.name2015-04-17 19:10 0 Job name flag file
[ ]jp_iLVrUyD.align2015-04-17 21:38 82KPSIBLAST alignment in FASTA format
[TXT]jp_iLVrUyD.als2015-04-17 21:38 2.7KAlscript command file for PS/PDF output
[ ]jp_iLVrUyD.blast.gz2015-04-17 21:37 837KCompressed PSIBLAST output file
[TXT]jp_iLVrUyD.coils.csv2015-04-17 21:38 876 COILS output in CSV format
[ ]jp_iLVrUyD.coilseq.lupas_142015-04-17 21:38 5.9KCOILS output, window length 14
[ ]jp_iLVrUyD.coilseq.lupas_212015-04-17 21:38 5.9KCOILS output, window length 21
[ ]jp_iLVrUyD.coilseq.lupas_282015-04-17 21:38 5.9KCOILS output, window length 28
[ ]jp_iLVrUyD.concise2015-04-17 21:38 163KPrediction: coiled-coil, solvent, alignment
[ ]jp_iLVrUyD.concise.blc2015-04-17 21:38 83KBLC format prediction and alignment data
[ ]jp_iLVrUyD.concise.fasta2015-04-17 21:38 84KPrediction: coiled-coil, solvent, alignment
[ ]jp_iLVrUyD.concise.pdf2015-04-17 21:38 513KPDF prediction and alignment data
[ ]jp_iLVrUyD.concise.ps2015-04-17 21:38 9.4MPrediction: coiled-coil, solvent, alignment
[ ]jp_iLVrUyD.fasta2015-04-17 21:32 155 Input query sequence in FASTA format
[ ]jp_iLVrUyD.full_MSA.fasta2015-04-17 21:37 1.4MFull MSA before JPred filters in FASTA
[TXT]jp_iLVrUyD.full_MSA.fasta.noGaps.html2015-04-17 21:38 415KFull MSA before JPred filters in FASTA
[TXT]jp_iLVrUyD.full_MSA.fasta.withGaps.html2015-04-17 21:38 4.9MFull MSA before JPred filters in FASTA
[ ]jp_iLVrUyD.hmm2015-04-17 21:38 26KHHMer2 profile of the alignment
[TXT]jp_iLVrUyD.html2015-04-17 21:38 193KHTML prediction and alignment data
[ ]jp_iLVrUyD.input2015-04-17 19:10 148 Raw input data for analysis
[ ]jp_iLVrUyD.jalview2015-04-17 21:38 3.6KJalview annotation file for alignment
[ ]jp_iLVrUyD.jnet2015-04-17 21:38 5.2KJnet secondary structure output
[TXT]jp_iLVrUyD.profile2015-04-17 21:36 23KPSIBLAST profile from alignment
[ ]jp_iLVrUyD.pssm2015-04-17 21:38 30KPSIBLAST PSSM for Jnet
[TXT]jp_iLVrUyD.results.html2016-02-15 12:18 65KJPred results page
[TXT]jp_iLVrUyD.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_iLVrUyD.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_iLVrUyD.seq2015-04-17 19:10 155 Sequence data file
[TXT]jp_iLVrUyD.simple.html2015-04-17 21:38 1.4KBrief HTML: sequence and prediction only
[TXT]jp_iLVrUyD.svg.html2015-04-17 21:38 57KJalview SVG summary of results
[ ]jp_iLVrUyD.tar.gz2015-04-17 21:38 1.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.